BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0019.p
         (108 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

msr9341 [O] COG0234 Co-chaperonin GroES (HSP10)                       106   9e-24
mll8202 [O] COG0234 Co-chaperonin GroES (HSP10)                       106   9e-24
msl5812 [O] COG0234 Co-chaperonin GroES (HSP10)                       106   9e-24
SMc00912 [O] COG0234 Co-chaperonin GroES (HSP10)                      103   5e-23
SMa0745 [O] COG0234 Co-chaperonin GroES (HSP10)                       103   8e-23

>msr9341 [O] COG0234 Co-chaperonin GroES (HSP10)
          Length = 98

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 18  KPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKD-GVRVPLEVKEGD 76
           +PL +RV+V   E E  T+ GI++PD++KEKPQEG IIAVGSGA  + G  VPL+VK GD
Sbjct: 7   RPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAGD 66

Query: 77  RVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           R+LF K++GTE+K  G++ LIMKESDI  I+
Sbjct: 67  RILFGKWSGTEVKLNGEDLLIMKESDIMGII 97


>mll8202 [O] COG0234 Co-chaperonin GroES (HSP10)
          Length = 98

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 18  KPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKD-GVRVPLEVKEGD 76
           +PL +RV+V   E E  T+ GI++PD++KEKPQEG IIAVGSGA  + G  VPL+VK GD
Sbjct: 7   RPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLVPLDVKAGD 66

Query: 77  RVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           R+LF K++GTE+K  G++ LIMKESDI  I+
Sbjct: 67  RILFGKWSGTEVKLNGEDLLIMKESDIMGII 97


>msl5812 [O] COG0234 Co-chaperonin GroES (HSP10)
          Length = 98

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%), Gaps = 1/92 (1%)

Query: 17  IKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKD-GVRVPLEVKEG 75
           ++PL +RV+V   E E  T+ GI++PD++KEKPQEG IIAVGSGA  + G  VPL+VK G
Sbjct: 6   LRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAG 65

Query: 76  DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           DR+LF K++GTE+K  G++ LIMKE+DI  I+
Sbjct: 66  DRILFGKWSGTEVKLNGEDLLIMKEADIMGII 97


>SMc00912 [O] COG0234 Co-chaperonin GroES (HSP10)
          Length = 98

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 18  KPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKD-GVRVPLEVKEGD 76
           +PL +RV+V   E E+ T  GI++PD++KEKPQEG I+AVGSGA  + G  VPL+VK GD
Sbjct: 7   RPLHDRVVVRRVESEEKTKGGIIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGD 66

Query: 77  RVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           R+LF K++GTE+K  G++ LIMKE+DI  ++
Sbjct: 67  RILFGKWSGTEVKINGEDLLIMKEADIMGVI 97


>SMa0745 [O] COG0234 Co-chaperonin GroES (HSP10)
          Length = 98

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 18  KPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKD-GVRVPLEVKEGD 76
           +PL +RV+V   E E+ T  G+++PD++KEKPQEG I+AVGSGA  + G  VPL+VK GD
Sbjct: 7   RPLHDRVVVRRVESEEKTKGGVIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGD 66

Query: 77  RVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           R+LF K++GTE+K  G++ LIMKE+DI  ++
Sbjct: 67  RILFGKWSGTEVKINGEDLLIMKEADIMGVI 97


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.137    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,175,874
Number of extensions: 367090
Number of successful extensions: 811
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 38,378,431
Length adjustment: 76
Effective length of query: 32
Effective length of database: 29,613,047
Effective search space: 947617504
Effective search space used: 947617504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)