BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0014.p
         (427 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0802 [T] COG2972 Predicted signal transduction protein with a...   100   5e-21
CAC1582 [T] COG2972 Predicted signal transduction protein with a...    87   6e-17

>lin0802 [T] COG2972 Predicted signal transduction protein with a C-terminal
           ATPase domain
          Length = 433

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 21/286 (7%)

Query: 136 GNGMLAGWYWCLLFLVPLLSIATLLQLSNS---LFFRSYPQLFPVVPSXXXXXXXXXXXX 192
           GNG L   YW     + +  I  +L L++S   + F  +  + P++P             
Sbjct: 155 GNGSLPTIYWTTFLFITMKDILWVLILADSPVEISFYYWAAVIPLLPVSYILFYYTRRSI 214

Query: 193 SDRILHAQAERSRRILLEQQNTYYLNQYHLIRSMQEDSFKFQHDFKHILLGLRVKLSSG- 251
            ++++  Q +     +L+++N YY  Q   ++   E     +HD K+ L  L     SG 
Sbjct: 215 -EKMVKTQVDSK---VLDEKNKYYEQQLVTMKQTLESQRTVRHDLKNKLSPLIYLAESGK 270

Query: 252 --EAAATAQELDTLLCRVESPTGN--CNTGNLVIDSMINYKMQEAARYGITFTLELNIPP 307
             E     QEL +L     S  G    ++GN+ ID +IN K+Q  A  G+T   E+N+P 
Sbjct: 271 TDELVEQVQELGSL-----SVLGKIYADSGNITIDYIINLKLQALANKGVTIFCEINVPN 325

Query: 308 QLALDTTALCVILGNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQ 367
            + +    L  +LGN +DNA EA + +     E+ I I + Y    L +++ N +   I 
Sbjct: 326 DIDVVPFDLSTVLGNLIDNAAEALEYVQN---EKWIGIKISYQVGFLMIQVANSF-DGIV 381

Query: 368 TTPSGGIRSAKSDHRAHGIGLKNIQKTIGERNGLLDISYDHSFFQI 413
              +  I S K D   HGIGL +I+K  G+ +G + + +D   F +
Sbjct: 382 HLDNKKIISRKEDTENHGIGLTSIKKIAGKYDGEVVVQHDDKQFDV 427


>CAC1582 [T] COG2972 Predicted signal transduction protein with a C-terminal
           ATPase domain
          Length = 452

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 1/211 (0%)

Query: 195 RILHAQAERSRRILLEQQNTYYLNQYHLIRSMQEDSFKFQHDFKHILLGLRVKLSSGEAA 254
           ++L  + ER + IL++QQ          I+++ +++    HD    +  LR    S    
Sbjct: 229 KMLDGEEEREKSILMQQQLNLQFEHNKNIQNLYKNTRGVMHDINKHINCLRNLAYSDNID 288

Query: 255 ATAQELDTLLCRVESPTGNCNTGNLVIDSMINYKMQEAARYGITFTLELNIPPQLALDTT 314
                L+ +   ++       TGN V D++IN K   A   GI    +  +P +  ++  
Sbjct: 289 VLKNYLNNISETIKKLDFIIKTGNAVADAVINEKYTIAKNEGIELYCDFIMPEKAGIEPI 348

Query: 315 ALCVILGNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQTTPSGGI 374
            L +IL N+LDNAIEAC+ I      ++ISI     N  L + I N   + I+   +  I
Sbjct: 349 DLSIILNNSLDNAIEACRKIKNLELHKRISIKSIVKNSFLIIEISNSCEEGIKYCNNNII 408

Query: 375 RSAKSDHRAHGIGLKNIQKTIGERNGLLDIS 405
            + KS+   HGIG+ NI++ + + +G  DI 
Sbjct: 409 STKKSETN-HGIGISNIKEAVKKYSGTFDIK 438


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.326    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 24,985,679
Number of extensions: 862636
Number of successful extensions: 1633
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1629
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 318
Effective length of database: 25,807,025
Effective search space: 8206633950
Effective search space used: 8206633950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 117 (49.7 bits)