BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0013.p (244 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0801 [KT] COG3279 Response regulator of the LytR/AlgR family 83 4e-16 CAC1581 [KT] COG3279 Response regulator of the LytR/AlgR family 72 1e-12 BS_lytT [KT] COG3279 Response regulator of the LytR/AlgR family 59 6e-09 SA0251 [KT] COG3279 Response regulator of the LytR/AlgR family 53 3e-07 BS_yccH [KT] COG3279 Response regulator of the LytR/AlgR family 50 4e-06 >lin0801 [KT] COG3279 Response regulator of the LytR/AlgR family Length = 240 Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 15/242 (6%) Query: 2 IHIAICDDDPRSAGLVESLILDNRERFSEKIDMSVYFSAERFVEALGQGSIFXXXXXXXX 61 + IAICDDD +ES+IL + + + +++ +E + F Sbjct: 3 LKIAICDDDKVVCAQIESMILQYAQESGFDVTIHIFYDGSSLMEGIQNDDNFDLIYLDIE 62 Query: 62 XXXXXXXXXXHVLRADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKLI 121 +R + Q+ Y+S QY QLFDV+P FI KP+ + L+ Sbjct: 63 MDGINGVDVGMTIRDKLRDHKMQIVYVSGKGQYDRQLFDVQPLLFIPKPIEESKLV---- 118 Query: 122 PAVQKAIRIRQQGKQHFLPVQLKGKER----LVPLRDIHYLESRIRRISLMTRDGEIQYY 177 K+I + ++ K P K+R V + DI Y E+ R + +MT DG + Sbjct: 119 ----KSINLARE-KLALTPKLYHYKKRKEYFSVWMEDIIYFENSGRNVKIMTIDGTDLFV 173 Query: 178 GTLGEEARK-LPSGYFIRIHQSYIVNFYSVKEISARRIVLITGDELPVSEKNSIPVRKAY 236 G + + A++ LP G FI+I QS IVN+ V + S I+LI +++ + + V++ + Sbjct: 174 GNIKDIAKEVLPYG-FIQISQSIIVNYNFVSKYSREEIILINKEKIAIPKNKRNGVKEQF 232 Query: 237 MK 238 ++ Sbjct: 233 LR 234 >CAC1581 [KT] COG3279 Response regulator of the LytR/AlgR family Length = 234 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 82 PAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQ---KSLLDKLIPAVQKAIRIRQQGKQHF 138 A + +++SY Y FDVR +I KP+ Q K +L++ + +K R F Sbjct: 77 DAVIIFVTSYRDYVFDAFDVRAFNYIIKPIDQERIKKILNEALAEFEKQDR--------F 128 Query: 139 LPVQLKGKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEEARKLPSGYFIRIHQS 198 + + K V LRDI Y+E+ R+I + T I+YY + + +L F R H+S Sbjct: 129 IITKTISKSTKVFLRDITYIEAEKRKIKIHTTYDVIEYYNKISQLEEELREYNFFRCHKS 188 Query: 199 YIVNFYSVKEISARRIVLITGDELPVSE 226 YIVN VK I L D++ +S+ Sbjct: 189 YIVNLGYVKSYDNTSITLENNDKIYISK 216 >BS_lytT [KT] COG3279 Response regulator of the LytR/AlgR family Length = 241 Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 82 PAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKL--IPAVQKAIRIRQQGK---Q 136 P + + ++Y+QY L+ F+V ++ KP ++ + L V + I +Q Q Sbjct: 75 PPAIVFATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVNRDIVETEQNSHAGQ 134 Query: 137 HFLPVQLKGKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEEARKLPSGYFIRIH 196 H L + + +V +DI Y + +++ T D TL +KLP FIR+H Sbjct: 135 HKLALSVGESIVIVDTKDIIYAGTEDGHVNVKTFDHSYTVSDTLVVIEKKLPDSDFIRVH 194 Query: 197 QSYIVNFYSVKEI-----SARRIVLITGDELPVSEKNSIPVRK 234 +S++VN +KEI S +++ G ++PVS + ++K Sbjct: 195 RSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKK 237 >SA0251 [KT] COG3279 Response regulator of the LytR/AlgR family Length = 246 Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 10/139 (7%) Query: 81 DPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSL---LDKLIPAVQK----AIRIRQQ 133 +P + + ++++QY +Q F++ + +I KP GQK + ++K+ K A I Sbjct: 73 EPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNNASAIAND 132 Query: 134 GKQHF---LPVQLKGKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEEARKLPSG 190 +F LPV++ K ++ ++I + + ++ T + + + L ++L Sbjct: 133 MSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPT 192 Query: 191 YFIRIHQSYIVNFYSVKEI 209 YFIRIH+SYI+N +KE+ Sbjct: 193 YFIRIHRSYIINTKHIKEV 211 >BS_yccH [KT] COG3279 Response regulator of the LytR/AlgR family Length = 233 Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Query: 85 LFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKLIPAVQKAIRIRQQGKQHFLPVQLK 144 + +++ + Y + FD+ +I KP L ++K G+ + ++ K Sbjct: 78 VIFVTGHGGYAVHAFDLNVHDYIMKPYYADRLAASFDRYLKKKTETSLNGR---ILIKQK 134 Query: 145 GKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEEARKLPSGYFIRIHQSYIVNFY 204 + ++ +DI + E R +++T E+Q Y TL + LP F+R H+S+I+N + Sbjct: 135 SEMHVLQKKDIIFAERTGRSTTIVTTAEEVQTYQTLNDIKGDLPEKDFLRSHRSFIINIH 194 Query: 205 SVKEISA 211 +K SA Sbjct: 195 YIKHFSA 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,316,955 Number of extensions: 609157 Number of successful extensions: 862 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 867 Number of HSP's successfully gapped: 5 Length of query: 244 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 140 Effective length of database: 26,383,695 Effective search space: 3693717300 Effective search space used: 3693717300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 114 (48.5 bits)