BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0005.p (204 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1002 [K] COG1309 Transcriptional regulator 109 4e-24 lin1827 [K] COG1309 Transcriptional regulator 80 2e-15 Cgl0937 [K] COG1309 Transcriptional regulator 54 1e-07 Z2510 [K] COG1309 Transcriptional regulator 51 1e-06 aq_321 [K] COG1309 Transcriptional regulator 51 2e-06 >BH1002 [K] COG1309 Transcriptional regulator Length = 201 Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 M+G++RRK++K I + LF +YG QKVS+ EIA+ A VS TIYNYF +K L + Sbjct: 1 MDGFQRRKEQKKRDILEAALSLFMEYGLQKVSIAEIAKNANVSQVTIYNYFESKHNLTHE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 + +Y+MD + +EQ + S FPEK KEIM + + + I +EF + E E + Sbjct: 61 VFLYYMDKAVRDFEQTVYSDKPFPEKIKEIMFRKKEVARRIHEEFYQYLMKEYTANETIA 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 E + ++ F GK++GY+ + E ++ Y M + + E Sbjct: 121 ENDYMQNALQHFDHLFQEGKEQGYVDPSLSHEAIIFYIKMLNEYIQKEEVY---EKILPL 177 Query: 184 MDQWLKLFFYGLGG 197 + KLFFYG+ G Sbjct: 178 TEDITKLFFYGIMG 191 >lin1827 [K] COG1309 Transcriptional regulator Length = 191 Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 6/195 (3%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MN YE+R KK I + LF K GF +VS+ +IA A VS +IYNYFG KE L + Sbjct: 1 MNNYEKRTLKKKTAITHAALTLFGKAGFSEVSIKDIASLAGVSQVSIYNYFGNKEALVAE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEK-TKEIMLLEVKNLKIISDEFMKAPSAEQVGLERM 122 M + + E+IL S +F EK T+ I L + + + +F+ +++ + Sbjct: 61 CAKVIMQDTISLAEEILVSEGTFTEKLTRAIQLCHAE-INVSLSKFISTEASKDSQFITL 119 Query: 123 MEQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTI 182 + + +M++VA GK+ I+ + +D+++ ++ N LG EE Sbjct: 120 LVNNINKLKNDIYMEYVAAGKKAKVINNDISDDVIQLFIDSI-NGLGLTIP---EEELEK 175 Query: 183 NMDQWLKLFFYGLGG 197 + + LF YGL G Sbjct: 176 KQAEIIHLFLYGLIG 190 >Cgl0937 [K] COG1309 Transcriptional regulator Length = 217 Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 9/83 (10%) Query: 2 EKMNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLY 61 ++M G ERR EQ+ S+ +F++ GF SV EIA A VS +Y +FG KE LY Sbjct: 4 QRMTGKERR-----EQLISIGRAVFAERGFDGASVEEIAARANVSKPVVYEHFGGKEGLY 58 Query: 62 GDMLIYWMDNQLEQYEQILESSL 84 ++ D ++ + E ++ SL Sbjct: 59 AVVI----DREMVKLEAMITGSL 77 >Z2510 [K] COG1309 Transcriptional regulator Length = 188 Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 8 ERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGDMLIY 67 E R +++ ++I + + + F + GF S+++IA EA++S IY YF K+ + +M+ Sbjct: 6 EIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYRYFANKDAIIEEMVRR 65 Query: 68 WMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMMEQYS 127 +D ++ Q + I + FPE +L K+L D M +AE R+M Sbjct: 66 IIDFRIAQMD-IDARTDHFPE-----VLALRKSLNEDDDALMLEVAAEATRNPRVMAMLE 119 Query: 128 EEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWT 173 E F + + ++ E + ++ TM + + R T Sbjct: 120 EADARMFANGCAHMKRMHPHLSEEHIRCCVEVFATMMEGTVYRRLT 165 >aq_321 [K] COG1309 Transcriptional regulator Length = 198 Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 47/75 (62%) Query: 17 QIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGDMLIYWMDNQLEQY 76 +I V+ KLF++ G+ ++ +IA+ +S +YNYF +KE+L +++++ E+ Sbjct: 14 EIMRVACKLFAQKGYHNTTMPDIAKALGMSVGNLYNYFSSKEELAKEIMLFTSKLVGERL 73 Query: 77 EQILESSLSFPEKTK 91 ++ ES+L F EKTK Sbjct: 74 RKVNESNLDFKEKTK 88 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,318,272 Number of extensions: 513713 Number of successful extensions: 1212 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 1216 Number of HSP's successfully gapped: 13 Length of query: 204 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 103 Effective length of database: 26,729,697 Effective search space: 2753158791 Effective search space used: 2753158791 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)