BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0001.p
         (160 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0670 [S] COG3708 Uncharacterized protein conserved in bacteria      106   2e-23
BS_yobU [S] COG3708 Uncharacterized protein conserved in bacteria      99   3e-21
CAC3493 [S] COG3708 Uncharacterized protein conserved in bacteria      57   1e-08
lin2534 [S] COG3708 Uncharacterized protein conserved in bacteria      56   2e-08

>BH0670 [S] COG3708 Uncharacterized protein conserved in bacteria
          Length = 159

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 15  GVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYESDANGAYTVV 74
           G   RTTN  E   EG +   W+ +++   +     +    I A+YTDYESD  G YT  
Sbjct: 15  GRMARTTNEAEMKGEGVISSQWDAFYKEPFVDRIPQQKEEAIIALYTDYESDETGEYTFA 74

Query: 75  IGHESSDKP-VPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAYFGESTEKRA 133
           IG +  D+   P+  + V V  P + Y  FT++KGP+ +VV +AW+EIW +   +  KRA
Sbjct: 75  IGAKVQDEAEAPEGLSKVTV--PEATYVKFTSRKGPMDQVVMEAWQEIWEWSKANPNKRA 132

Query: 134 YTGDFELYDARDFDPANTELQIYIAI 159
           +  DFE+YD R  DP N ++ IYI++
Sbjct: 133 FIADFEVYDERAQDPQNGQVDIYISV 158


>BS_yobU [S] COG3708 Uncharacterized protein conserved in bacteria
          Length = 160

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 10/150 (6%)

Query: 15  GVAVRTTNAEEAGPEGRLPKLWETYFQ---SNLLSAAGGENPHFIYAVYTDYESDANGAY 71
           G++ RT+NA E   E R+P LW+  ++   S LLS A  E    I A+Y++YE + NG Y
Sbjct: 16  GLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQA--EKDKSIIALYSNYEQETNGFY 73

Query: 72  TVVIG-HESSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAYFGESTE 130
           T  +G  +  D  +P    ++   +P S Y VFT++ GP+ E+V + W+EIW +  +   
Sbjct: 74  TFSVGTFQEYDDILPGPYENI--DLPASAYAVFTSRIGPIEEIVLETWKEIWTW--DKRH 129

Query: 131 KRAYTGDFELYDARDFDPANTELQIYIAIR 160
            R +TGDFE+YD     P   ++ IY+AI+
Sbjct: 130 LRTFTGDFEMYDQNAAVPQRAQVNIYVAIK 159


>CAC3493 [S] COG3708 Uncharacterized protein conserved in bacteria
          Length = 146

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 14/160 (8%)

Query: 1   MNTYTVHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVY 60
           M    V  +  I+ GV+  T+N ++      +  LWE  +Q  +      +   +   +Y
Sbjct: 1   MEYEIVKLEEKIVLGVSAVTSN-DDPNMGKVIGGLWEKLYQGGINETIKNKVNEYAIGLY 59

Query: 61  TDYESDANGAYTVVIGHESSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWRE 120
           +DYE +    Y V +G+E       +++   +  +P  KY  F+ + G + + VA+AW +
Sbjct: 60  SDYEDNK---YVVTVGNEVCK---AENEALTIKKIPAGKYAKFSIE-GHMEKAVAEAWSK 112

Query: 121 IWAYFGESTEKRAYTGDFELYDARDFDPANTELQIYIAIR 160
           IW    +    R+Y  DFE Y   DF+  N ++ IYI+++
Sbjct: 113 IW----QMNLDRSYEADFEEYLNSDFN--NAKVDIYISLK 146


>lin2534 [S] COG3708 Uncharacterized protein conserved in bacteria
          Length = 127

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 28/152 (18%)

Query: 8   KQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYESDA 67
           ++N +I G  +RT+N++   P   + +LW       ++    G+    I+AVY++Y SD 
Sbjct: 4   QENKVINGKQIRTSNSD-FSP---IAELWGEV----MVEKPAGD----IFAVYSNYASDF 51

Query: 68  NGAYTVVIGHESSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAYFGE 127
            G Y +++G    D    ++KN     +   +Y VFT      ++ VA+ W+EIWA   +
Sbjct: 52  TGEYDLLVGTSDWD----EEKN---TEIEAGEYLVFTVDNTN-HKGVAEVWQEIWAR--D 101

Query: 128 STEKRAYTGDFELYDARDFDPANTELQIYIAI 159
           S  +RAY  DFE Y        N ++++YI+I
Sbjct: 102 SELQRAYKTDFEWY------HTNGKIEVYISI 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,902,063
Number of extensions: 545876
Number of successful extensions: 673
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 5
Length of query: 160
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 62
Effective length of database: 27,075,699
Effective search space: 1678693338
Effective search space used: 1678693338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)