BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0030.p
         (342 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0520 [KG] COG1940 Transcriptional regulator/sugar kinase           151   2e-36
BS_xylR [KG] COG1940 Transcriptional regulator/sugar kinase            61   2e-09

>lin0520 [KG] COG1940 Transcriptional regulator/sugar kinase
          Length = 334

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 6/327 (1%)

Query: 11  IKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLAAGQISSSGGR 70
           +KE+N   ++ +L+++   TK +IAE T LS+VT   ++  LV   E+L      ++GGR
Sbjct: 7   LKELNKKNIKSILRQQGAMTKAEIAEVTRLSVVTVNKLIRDLVENEEILEQDNSVATGGR 66

Query: 71  PARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVNRPVEQVDLACFEAIID 130
            A  Y  N      L++   E+   I    +V  L G   +  +   E +D+   +    
Sbjct: 67  RAVSYKINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTK 126

Query: 131 ELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIENDVXXXX 190
           +L+  +P I  +  G+PG E GG+L   D+  L  + + E         V++E D     
Sbjct: 127 DLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAI 186

Query: 191 XXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGISWSGSE 250
                   +      V LY+P+RFPPGAG+++NG++ +G++G AGE+ ++PL + W   +
Sbjct: 187 LGYKNRPVK--EENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFD 244

Query: 251 WQSSPAGLMEAIARLTATVSSVLNPDAVVLYGSFL--QVDHLSGIMEQCAGLLPPGAAPQ 308
           +  S   +   I ++     S  +P+ +VLY +F   Q D    + E+   + P    P+
Sbjct: 245 F--SVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFTEELTEELKQVYPYATLPK 302

Query: 309 IVLSTDFAADYLDGMIVSTLATLETGL 335
           IVLS  F  DY  G++   +  LE  +
Sbjct: 303 IVLSRKFTTDYRIGLLAFGIDYLENNM 329


>BS_xylR [KG] COG1940 Transcriptional regulator/sugar kinase
          Length = 350

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 15/264 (5%)

Query: 38  TGLSIVTAGSVLEVLVRQNEVLAAGQISSSGGRPARQYIYNDEHALAL-ILFPFEERGGI 96
           TGL+  T  S +  L++++ V   GQ  SSGGR     ++N +   ++ I    +   GI
Sbjct: 2   TGLNKSTVSSQVNTLMKESMVFEIGQGQSSGGRRPVMLVFNKKAGYSVGIDVGVDYINGI 61

Query: 97  C--IRCTVVTLFGRCLYEVNRPVEQVDLACFEAIIDELLNRYP----AIQAIGFGLPG-A 149
              +  T+V    R L E N P    D+     +I   + + P        IG  +PG  
Sbjct: 62  LTDLEGTIVLDQYRHL-ESNSPEITKDILI--DMIHHFITQMPQSPYGFIGIGICVPGLI 118

Query: 150 EAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIENDVXXXXXXXXXXXGRXXXXXXVYLY 209
           +   ++V +     R I +    +E+Y   V IEN+                    +Y+ 
Sbjct: 119 DKDQKIVFTPNSNWRDIDLKSSIQEKYNVSVFIENEANAGAYGEKLFGAAKNHDNIIYVS 178

Query: 210 FPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGISWSGSEWQSSPAGLMEAIARLTATV 269
                  G G+IIN  L+RG SGF+GE+ ++   I ++G +      G  E  A   A +
Sbjct: 179 ISTGI--GIGVIINNHLYRGVSGFSGEMGHMT--IDFNGPKCSCGNRGCWELYASEKALL 234

Query: 270 SSVLNPDAVVLYGSFLQVDHLSGI 293
            S+   +  + Y   + + HL+ I
Sbjct: 235 KSLQTKEKKLSYQDIINLAHLNDI 258


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 24,310,558
Number of extensions: 964277
Number of successful extensions: 2250
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2245
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 235
Effective length of database: 26,037,693
Effective search space: 6118857855
Effective search space used: 6118857855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)