BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0024.p (280 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all1517 [R] COG0535 Predicted Fe-S oxidoreductases 251 7e-67 SMa0814 [R] COG0535 Predicted Fe-S oxidoreductases 220 2e-57 CAC0259_2 [R] COG0535 Predicted Fe-S oxidoreductases 209 5e-54 MTH1871 [R] COG0535 Predicted Fe-S oxidoreductases 191 1e-48 MJ1093 [R] COG0535 Predicted Fe-S oxidoreductases 160 2e-39 >all1517 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 13/248 (5%), Positives = 32/248 (12%), Gaps = 2/248 (0%) Query: 13 IHRHPCYDELAHEVFARMHVAVAPXXXXXXXXXXXXXXXVSESRPGVVSRVLSPGEAYRQ 72 D VS + + Sbjct: 41 AQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIR 100 Query: 73 VQDTLKVLPQLTVVGIAGPGDPLANPVQTFETFRLLSREMPDLQLCLSTNGLKLPDYLEE 132 L + + + T+ L+ Sbjct: 101 PDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT 160 Query: 133 IKECGIRHVTVTMNAVDPVIGGLIYHSIYYRGKAYRGKDAAEILISRQLEGIRAVAALGI 192 + + + Y + + R+ Sbjct: 161 LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLA 220 Query: 193 KVKVNSVLIPGINDGHLLEVSRVVKAAGAFSHNIMPLIISP--GSRFERDGRQPPDPELT 250 +V + GA + S E+ + Sbjct: 221 EVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDI 280 Query: 251 LKVQEDSS 258 + Sbjct: 281 ARRHGLDP 288 >SMa0814 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 21/236 (8%), Positives = 45/236 (19%), Gaps = 2/236 (0%) Query: 13 IHRHPCYDELAHEVFARMHVAVAPXXXXXXXXXXXXXXXVSESRPGVVSRVLSPGEAYRQ 72 I Y + S P + + Sbjct: 47 IDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALD 106 Query: 73 VQDTLKVLPQLTVVGIAGPGDPLANPVQTFETFRLLSREMPDLQLCLSTNGLKLPDYLEE 132 ++ + L D T + + L D L E Sbjct: 107 RKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAE 166 Query: 133 IKECGIRHVTVTMNAVDPVIGGLIYHSIYYRGKAYRGKDAAEILISRQLEGIRAVAALGI 192 + G N + ++ + + L++R E A + Sbjct: 167 YQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYE 226 Query: 193 KVKVNSVLIPGINDGHLLEVSRVVKAAGAFSHNIMPLIIS--PGSRFERDGRQPPD 246 V++ + G ++ A + S + Sbjct: 227 GVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAR 282 >CAC0259_2 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 12/223 (5%), Positives = 30/223 (13%), Gaps = 1/223 (0%) Query: 16 HPCYDELAHEVFARMHVAVAPXXXXXXXXXXXXXXXVSESRPGVVSRVLSPGEAYRQVQD 75 H + ++ R Sbjct: 4 HRIPHSSLEV-STLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 76 TLKVLPQLTVVGIAGPGDPLANPVQTFETFRLLSREMPDLQLCLSTNGLKLPDYLEEIKE 135 L + G + L + R + + Q N + + + Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 136 CGIRHVTVTMNAVDPVIGGLIYHSIYYRGKAYRGKDAAEILISRQLEGIRAVAALGIKVK 195 + P + ++ + Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 196 VNSVLIPGINDGHLLEVSRVVKAAGAFSHNIMPLIISPGSRFE 238 V+ V N + Sbjct: 183 AFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQY 225 >MTH1871 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 16/215 (7%), Positives = 30/215 (13%), Gaps = 3/215 (1%) Query: 16 HPCYDELAHEVFARMHVAVAPXXXXXXXXXXXXXXXVSESRPGVVSRVLSPGEAYRQVQD 75 E + P Sbjct: 16 LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAE-MYPVPPRPETQGLTETYVGNWLA 74 Query: 76 TLKVLPQLTVVGIAGPGDPLANPVQTFETFRLLSREMPDLQLCLSTNGLKLPDYLEEIKE 135 ++ G N + + L R+ L S L+ Sbjct: 75 KHGSRE-KLIIASKVSGPSRNND-KGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVH 132 Query: 136 CGIRHVTVTMNAVDPVIGGLIYHSIYYRGKAYRGKDAAEILISRQLEGIRAVAALGIKVK 195 R S+ A A + + A + Sbjct: 133 WPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHL 192 Query: 196 VNSVLIPGINDGHLLEVSRVVKAAGAFSHNIMPLI 230 + +P I + Sbjct: 193 ADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEG 227 >MJ1093 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 11/248 (4%), Positives = 33/248 (13%), Gaps = 7/248 (2%) Query: 16 HPCYDELAHEVFARMHVAVAPXXXXXXXXXXXXX-XXVSESRPGVVSRVLSPGEAYRQVQ 74 E + + + Sbjct: 16 LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAK 75 Query: 75 DTLKVLPQLTVVGIAGPGDPLANPVQTFETFRLLSREMPDLQLCLSTNGLKLPDYLEEIK 134 + + + + + + L Y Sbjct: 76 HGSREKLIIASKVSGPSRNNDKGI-RPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWP 134 Query: 135 ECGIRHVTVTMNAVDPVIGGLIYHSIYYRGKAYRGKDAAEILISRQLEGIRAVAALGIKV 194 + + + Y+ + + L + Sbjct: 135 QRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLAD 194 Query: 195 KVNSVLIPGINDGHLLEVSRVVKAAGAFSHNIMPLIISPGSRFERDGRQPPDPELTLKVQ 254 K + I I + + L A + L Sbjct: 195 KHDLPRIVTIQNPYSLLNRSFEVGL-AEVSQYEGVE----LLAYSCLGFGTLTGKYLNGA 249 Query: 255 EDSSRVLP 262 + + Sbjct: 250 KPAGARNT 257 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,153,090 Number of extensions: 756469 Number of successful extensions: 2554 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 2552 Number of HSP's successfully gapped: 7 Length of query: 280 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 175 Effective length of database: 26,268,361 Effective search space: 4596963175 Effective search space used: 4596963175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)