BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0023.p
         (162 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1517 [R] COG0535 Predicted Fe-S oxidoreductases                     82   5e-16
SMa0814 [R] COG0535 Predicted Fe-S oxidoreductases                     72   3e-13
MA1221 [R] COG0535 Predicted Fe-S oxidoreductases                      65   4e-11
MA2936 [R] COG0535 Predicted Fe-S oxidoreductases                      63   2e-10
CAC0259_2 [R] COG0535 Predicted Fe-S oxidoreductases                   59   5e-09

>all1517 [R] COG0535 Predicted Fe-S oxidoreductases
          Length = 346

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 0/149 (0%), Positives = 0/149 (0%), Gaps = 11/149 (7%)

Query: 5   PVYTLEERENE---LQKLDNELQVRRDRRQNGTAPGSGG--IRIAVASRGGGKVNQHFGH 59
               +                                                       
Sbjct: 326 LSEDVLAEIEAVHQ                                               385

Query: 60  AREFLVYEVKAESARLLGVRRIQAYCNGTAACAGEEQGAGILKETVEMLRDCRLLLCAGI 119
                                                                       
Sbjct: 386 ------                                                       439

Query: 120 GPVPQEVLHRAEITVIVTKDAIESSLVKY 148
                                        
Sbjct: 440                               468


>SMa0814 [R] COG0535 Predicted Fe-S oxidoreductases
          Length = 346

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 0/109 (0%), Positives = 0/109 (0%), Gaps = 8/109 (7%)

Query: 39  GGIRIAVASRGGGKVNQHFGHAREFLVYEVKAESARLLGVRRIQAYCNGTAACAGEEQGA 98
                                                                       
Sbjct: 369 ------                                                       422

Query: 99  GILKETVEMLRDCRLLLCAGIGPVPQEVLHRAEI--TVIVTKDAIESSL 145
                                                            
Sbjct: 423                                                   471


>MA1221 [R] COG0535 Predicted Fe-S oxidoreductases
          Length = 346

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 8/121 (6%), Positives = 18/121 (14%), Gaps = 16/121 (13%)

Query: 38  SGGIRIAVASRGGGKVNQHFGHAREFLVYEVKAESARLLGVRRIQAYCNGTAACAGEEQG 97
              +   +A  G  +                K         R+                 
Sbjct: 66  ETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALH---------D 116

Query: 98  AGI------LKETVEMLRDCRLLLCAGIGPVPQEVLHRAEITVIVTKDAIESSLVKYGRL 151
           +        L                 +G    +      +   +   A         R 
Sbjct: 117 SLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRA-GKIRY 175

Query: 152 L 152
           +
Sbjct: 176 I 176


>MA2936 [R] COG0535 Predicted Fe-S oxidoreductases
          Length = 346

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 2/106 (1%), Positives = 15/106 (14%), Gaps = 4/106 (3%)

Query: 40  GIRIAVASRGGGKVNQHFGHAREFLVYEVKAESARLLGVRRIQAYCNGTAACAGEEQGAG 99
            I  +        +       +             +     +              +   
Sbjct: 5   RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVA-EMYPVPPRPE--- 60

Query: 100 ILKETVEMLRDCRLLLCAGIGPVPQEVLHRAEITVIVTKDAIESSL 145
               T   + +      +    +    +              ++  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALD 106


>CAC0259_2 [R] COG0535 Predicted Fe-S oxidoreductases
          Length = 346

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 0/104 (0%), Positives = 0/104 (0%), Gaps = 3/104 (2%)

Query: 42  RIAVASRGGGKVNQHFGHAREFLVYEVKAESARLLGVRRIQAYCNGTAACAGEEQGAGIL 101
                                                                       
Sbjct: 297 --                                                           354

Query: 102 KETVEMLRDCRLLLCAGIGPVPQEVLHRAEITVIVTKDAIESSL 145
                                                       
Sbjct: 355 -                                            397


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,640,952
Number of extensions: 462749
Number of successful extensions: 750
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 64
Effective length of database: 27,075,699
Effective search space: 1732844736
Effective search space used: 1732844736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)