BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0021.p
         (72 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2783 [E] COG2873 O-acetylhomoserine sulfhydrylase                   87   8e-18
NMB1609 [E] COG0626 Cystathionine beta-lyases/cystathionine gamm...    70   5e-13
NMA1808 [E] COG0626 Cystathionine beta-lyases/cystathionine gamm...    70   5e-13
RSc1562 [E] COG2873 O-acetylhomoserine sulfhydrylase                   69   2e-12
STM0882 [J] COG2265 SAM-dependent methyltransferases related to ...    68   3e-12

>CAC2783 [E] COG2873 O-acetylhomoserine sulfhydrylase
          Length = 427

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           VKLFS  ANV DA+SL+I+   TTH ELN E+QKAAG+ P+ IRLSIG+EDA+DLI DL 
Sbjct: 362 VKLFSLLANVADAKSLVIHPSSTTHAELNEEEQKAAGVTPDMIRLSIGVEDAEDLIWDLN 421

Query: 61  QAFATA 66
           QA   A
Sbjct: 422 QALEQA 427


>NMB1609 [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases
          Length = 389

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           V+LFS  AN+GD RS I +   TTHG + PE++ AA I P  +RLS+GLE   DLI DL+
Sbjct: 325 VELFSRTANLGDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLK 384

Query: 61  QAFA 64
           QA A
Sbjct: 385 QALA 388


>NMA1808 [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases
          Length = 72

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 0/64 (0%), Positives = 0/64 (0%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
                                                                       
Sbjct: 325                                                              384

Query: 61  QAFA 64
               
Sbjct: 385      388


>RSc1562 [E] COG2873 O-acetylhomoserine sulfhydrylase
          Length = 444

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           + LFS+ ANVGDARSL+I+   TTH  ++     AAGI   TIRLSIGLEDADDLI DL+
Sbjct: 360 LGLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLIDDLK 419

Query: 61  QAFATA 66
           +    A
Sbjct: 420 RGLKAA 425


>STM0882 [J] COG2265 SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase
          Length = 376

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 0/63 (0%), Positives = 0/63 (0%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
                                                                       
Sbjct: 362                                                              421

Query: 61  QAF 63
              
Sbjct: 422     424


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,059,415
Number of extensions: 141698
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 34
Length of query: 72
Length of database: 38,378,431
Length adjustment: 43
Effective length of query: 29
Effective length of database: 33,419,069
Effective search space: 969153001
Effective search space used: 969153001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)