BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0011.p (202 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value APE1829 [V] COG1131 ABC-type multidrug transport system, ATPase ... 159 3e-39 PH1849 [V] COG1131 ABC-type multidrug transport system, ATPase c... 144 8e-35 PAB2068 [V] COG1131 ABC-type multidrug transport system, ATPase ... 142 3e-34 PAE3066 [V] COG1131 ABC-type multidrug transport system, ATPase ... 138 5e-33 CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase ... 129 2e-30 >APE1829 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 345 Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 80/160 (50%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 21 RAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRMLSTLLDPTSGSIEIDGMPMAD 80 R R V A++ ++ S+ +GEI LG NGAGKTTT+R+LSTLLDP G + G + Sbjct: 19 RIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVK 78 Query: 81 NRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNAAEIRSLSDLLLAEVGLTE-- 138 R V++++ ++ ER YW+LTGRENL YFGR+YG+ E++S +L VGLT+ Sbjct: 79 ERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLG 138 Query: 139 AADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLD 178 AD+P E+ S GMK RL +AR L+ DPE L LDEPTLGLD Sbjct: 139 GADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLD 178 >PH1849 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 318 Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 120/179 (67%), Gaps = 2/179 (1%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 +I++ + K+Y K L + E A++ +T + KGE+ GLLG NGAGKTTTI++L Sbjct: 3 VIEVRNLRKLYPKKIPLPFRKVEW--FEALKGITFRVKKGELFGLLGPNGAGKTTTIKIL 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 +TLL+P+SG ++ G+ + + R +++++N++A GER LYWRLT ENL+YF +Y + Sbjct: 61 TTLLEPSSGEAKVLGLDVVKDAREIRKRINLVAEGERTLYWRLTAYENLRYFASIYYIPR 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDA 179 E + LL VGL + + V YS+GMKQRL IA+ LINDPE LFLDEPTLGLD Sbjct: 121 REAEKRIEELLKMVGLWDRRNDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTLGLDV 179 >PAB2068 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 318 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 6/180 (3%) Query: 2 IQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRMLS 61 I++ + K+Y K L + E A++ +T ++ KGE+ GLLG NGAGKTTTI++L+ Sbjct: 4 IEVKNLRKLYPKKIPLPFRKIEW--FEALKGITFNVKKGELFGLLGPNGAGKTTTIKILT 61 Query: 62 TLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGL--N 119 TLL+PTSG + G + R +++++N++A GER LYWRLT ENL+YF +Y + Sbjct: 62 TLLEPTSGEARVLGFDIVKEAREIRKRINLVAEGERTLYWRLTAYENLRYFASIYYVPKK 121 Query: 120 AAEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDA 179 AE R + LL VGL + D V YS+GMKQRL IA+ LINDPE LFLDEPTLGLD Sbjct: 122 VAEERIRN--LLHMVGLWDRKDDLVMNYSRGMKQRLAIAKALINDPEVLFLDEPTLGLDV 179 >PAE3066 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 310 Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 110/172 (63%) Query: 7 VTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRMLSTLLDP 66 + K + +K R+GLF+ + V A+ + + I KG + L+G NGAGKTT +++ STLL P Sbjct: 9 LKKRFVSKERIGLFKTRLKVVEALAGVDVEIEKGRLWSLVGPNGAGKTTLVKIFSTLLLP 68 Query: 67 TSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNAAEIRSL 126 GS I G+ + V++ + ++ ++ + RL+G ENL Y+G LYGL+ E R Sbjct: 69 DEGSAFIGGLDVVREAHRVKKIIGLMLYPDKGFFGRLSGVENLIYYGMLYGLSKREARRR 128 Query: 127 SDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLD 178 + LL VGL E ++P E+YS GM+ RL +A+ LI++PE+L LDEPT+G+D Sbjct: 129 ALELLELVGLWEVRNRPYEEYSAGMRARLGLAKALISNPEFLLLDEPTVGID 180 >CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 310 Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 14/178 (7%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 M+++ +TK Y G F TAV +++ I GE+ GLLG NGAGK+T + M+ Sbjct: 1 MLELTNITKKY------GDF-------TAVNNISFKIEDGEVFGLLGPNGAGKSTIVSMI 47 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 ST++ PTSG I +D + + T +KV I + LY L+ ++NL++FG LYGLN Sbjct: 48 STVISPTSGDITVDN-KLLRQKPTEIKKVMGIVPQDIALYESLSAKDNLEFFGCLYGLNG 106 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLD 178 E++ + +L + L + DQ VE++S GMK+R+ I L+N+P+ L LDEPT+G+D Sbjct: 107 KELKERVNEVLKIIELEDKKDQAVEEFSGGMKRRVNIGVALMNNPKLLILDEPTVGID 164 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,062,638 Number of extensions: 505947 Number of successful extensions: 7113 Number of sequences better than 1.0e-05: 1840 Number of HSP's gapped: 5342 Number of HSP's successfully gapped: 1937 Length of query: 202 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 101 Effective length of database: 26,729,697 Effective search space: 2699699397 Effective search space used: 2699699397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)