BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0010.p
         (267 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

APE2512 [V] COG0842 ABC-type multidrug transport system, permeas...    63   4e-10
PH1846 [V] COG0842 ABC-type multidrug transport system, permease...    56   5e-08

>APE2512 [V] COG0842 ABC-type multidrug transport system, permease component
          Length = 268

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 60  GSGNYLAYAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQ 119
           G  +Y+A+  IG +L     + + +V   L  E  +GTLEA+L++P+SR  +  G AL  
Sbjct: 54  GYKDYVAFVAIGFSLYSLLTATLFDVGERLHRELVQGTLEAILVTPASRFSWLFGNALGS 113

Query: 120 FYRSGMVLLAVL-----VFGILAGMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYT 174
              S + L+ VL     +FG    + L A P  +A +G  L  +    M L+LG I++  
Sbjct: 114 LGVSLLDLVIVLAYYTIIFGS-GSLHLKAAPQAAAVLG--LGFIGMVGMGLLLGGIIVNL 170

Query: 175 RDTYIVQNTLFAVTTLLCGFQFPRQYLPGFLQTAGEVFP 213
           ++ +     L     LL G  FP + LP  L TA E+ P
Sbjct: 171 KEPHAFNVMLTPFLMLLSGMMFPVEVLPSPLDTAAELIP 209


>PH1846 [V] COG0842 ABC-type multidrug transport system, permease component
          Length = 273

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 59  AGSGNYLAYAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQ 118
           +G  +YL +AI+G  +  F ++ M     +++ E   GTLE+   +P  R  +FLG+ + 
Sbjct: 62  SGYSDYLTFAILGFMVLTFGVTFMSGFVWSIVDELYAGTLESSFAAPMRRITFFLGSIMV 121

Query: 119 QFYRSGMVL-LAVLVFGILAGMRLSAPPLLSAGIGGVLFILSCYAM---ALVLGSIMLYT 174
           +   + + + + + +F I  G+ +    LL    G V+ ++  + M    L+   I++Y 
Sbjct: 122 RLILNLLYIGIYIPIFWITFGLEVDLINLLK---GIVVLVIGAFGMMGLGLIAAGIVIYL 178

Query: 175 RDTYIVQNTLFAVTTLLCGFQFPRQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAIPLR 234
           +D     + L  +   L G  +P + LP  LQ    + P              G +  + 
Sbjct: 179 KDPGPFIDILEMLVFALSGAMYPVKILPKPLQIMANLLPYAPTTEAVRKVALVGLSKSIE 238

Query: 235 DTLPALLLSLVYIAVGMWSNRLVER 259
           + L  LL+S  Y  +G+ S R  ER
Sbjct: 239 EILYLLLISATYSLLGVISYRWAER 263


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.327    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,020,560
Number of extensions: 586215
Number of successful extensions: 1689
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1704
Number of HSP's successfully gapped: 8
Length of query: 267
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 162
Effective length of database: 26,268,361
Effective search space: 4255474482
Effective search space used: 4255474482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 115 (48.9 bits)