BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0009.p
         (130 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yozA [K] COG0640 Predicted transcriptional regulators               55   2e-08
alr0831 [K] COG0640 Predicted transcriptional regulators               54   5e-08
BH0945 [K] COG0640 Predicted transcriptional regulators                51   3e-07
all3743 [K] COG0640 Predicted transcriptional regulators               51   5e-07
PA0547_1 [K] COG0640 Predicted transcriptional regulators              50   6e-07

>BS_yozA [K] COG0640 Predicted transcriptional regulators
          Length = 107

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 50  FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLF 109
           FKAL D TR+RIL LL QG H    +A  L + ++ VS QL+ L    L  + R+G  ++
Sbjct: 26  FKALSDPTRIRILHLLSQGEHAVNGIAEKLNLLQSTVSHQLRFLKNLRLVKSRREGTSIY 85

Query: 110 YT 111
           Y+
Sbjct: 86  YS 87


>alr0831 [K] COG0640 Predicted transcriptional regulators
          Length = 359

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 4/64 (6%), Positives = 14/64 (21%)

Query: 50  FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLF 109
           +      T   +      G    ++   +           L+   +A         ++  
Sbjct: 38  YGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHT 97

Query: 110 YTSH 113
              +
Sbjct: 98  AVHN 101


>BH0945 [K] COG0640 Predicted transcriptional regulators
          Length = 99

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 50  FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLF 109
           +KAL D  R +IL LL +G     ++A    +S+ A+S+ L +L  A L  AE+KG Y++
Sbjct: 6   YKALADMNRRKILDLLNEGDKTAGEIADQFDMSKPAISQHLTVLKNAELVHAEKKGQYVY 65

Query: 110 YT 111
           Y+
Sbjct: 66  YS 67


>all3743 [K] COG0640 Predicted transcriptional regulators
          Length = 120

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 50  FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLF 109
           FK L +++RL+IL  L  GP    ++A   G+ +A +SK LK+L++AGL   + KG   +
Sbjct: 21  FKVLSESSRLQILSCLKSGPMNVMEIAEATGLGQANLSKHLKVLTQAGLVSRQPKGTSAY 80

Query: 110 Y 110
           Y
Sbjct: 81  Y 81


>PA0547_1 [K] COG0640 Predicted transcriptional regulators
          Length = 125

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 51  KALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFY 110
           KA GD+ RL +L+ L        +LA I  I ++ +S  LK+L++AGL    R+GN +FY
Sbjct: 21  KAAGDSLRLNVLRALANDSFGVLELAQIFAIGQSGMSHHLKVLAQAGLVATRREGNAIFY 80


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,483,331
Number of extensions: 365393
Number of successful extensions: 825
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 16
Length of query: 130
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 36
Effective length of database: 27,537,035
Effective search space: 991333260
Effective search space used: 991333260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)