BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0007.p (174 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3029 [H] COG0521 Molybdopterin biosynthesis enzymes 126 2e-29 STM0803 [H] COG0521 Molybdopterin biosynthesis enzymes 117 9e-27 NMA0187 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and rel... 117 1e-26 moaB [H] COG0521 Molybdopterin biosynthesis enzymes 116 2e-26 ZmoaB [H] COG0521 Molybdopterin biosynthesis enzymes 116 2e-26 >PA3029 [H] COG0521 Molybdopterin biosynthesis enzymes Length = 211 Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 11/153 (7%), Positives = 29/153 (18%), Gaps = 5/153 (3%) Query: 15 PQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIRELVYKSSVH 74 + T + LI +L V+ + Y + Sbjct: 11 TRLRE--NNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELG 68 Query: 75 SGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSAAILSRAIAG 134 + + + +L + G R G + + Sbjct: 69 VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEA-LPGVGRKTANVVLN 127 Query: 135 TIGSTAVFSMPGSTGAIKLAMERLIIPEL--RH 165 T ++ + + + Sbjct: 128 TAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE 160 >STM0803 [H] COG0521 Molybdopterin biosynthesis enzymes Length = 170 Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 1/142 (0%) Query: 22 VITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIRELVYKSSVHSGIEAVL 81 ++TVS R E DT G +R +EAG+ V IVK++ IR V ++ VL Sbjct: 15 ILTVSSRRGEEDDTSGHYLRDSAQEAGHEVVAKAIVKENRYAIRAQVSAWIASDEVQVVL 74 Query: 82 LTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSAAILSRAIAGTIGSTAV 141 +TGGTG++ D EA+ L D+ + GFGE+FR+LSF ++IG+A + SRA+AG +T + Sbjct: 75 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSF-EEIGTATLQSRAVAGVANNTLI 133 Query: 142 FSMPGSTGAIKLAMERLIIPEL 163 F+MPGST A + A E +I P+L Sbjct: 134 FAMPGSTKACRTAWENIIAPQL 155 >NMA0187 [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Length = 182 Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 12/171 (7%) Query: 10 HRREAPQSVACYVITVSDTR--------TPET--DTGGALIRTMLEEAGYVVAGSTIVKD 59 H++ A +S + +ITVS +R +P+ D G ++ +LE AG V+ +V D Sbjct: 12 HKKNAKKSFSFALITVSTSRYEKYGDSVSPDEAEDLSGKAMKELLEAAGNNVSFYRLVPD 71 Query: 60 DYEDIRELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFT 119 + + + ++ S + V+ +GGTG++P+D T E+V L +K +PGFGE+FR S Sbjct: 72 EKNTLLNAI-SDALDSSADIVITSGGTGLAPKDLTIESVTPLFEKEIPGFGELFRYKSL- 129 Query: 120 DDIGSAAILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREI 170 +DIG++ IL+RA AG I AVF +PGS A+KLA+ +IIPE H++R + Sbjct: 130 EDIGTSVILTRASAGVIKGKAVFCLPGSPNAVKLALSEIIIPEAGHIVRHV 180 >moaB [H] COG0521 Molybdopterin biosynthesis enzymes Length = 170 Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 1/142 (0%) Query: 22 VITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIRELVYKSSVHSGIEAVL 81 ++TVS+ R E DT G +R +EAG+ V IVK++ IR V ++ VL Sbjct: 15 ILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVL 74 Query: 82 LTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSAAILSRAIAGTIGSTAV 141 +TGGTG++ D EA+ L D+ + GFGE+FR+LSF ++IG++ + SRA+AG T + Sbjct: 75 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSF-EEIGTSTLQSRAVAGVANKTLI 133 Query: 142 FSMPGSTGAIKLAMERLIIPEL 163 F+MPGST A + A E +I P+L Sbjct: 134 FAMPGSTKACRTAWENIIAPQL 155 >ZmoaB [H] COG0521 Molybdopterin biosynthesis enzymes Length = 170 Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 1/142 (0%) Query: 22 VITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIRELVYKSSVHSGIEAVL 81 ++TVS+ R E DT G +R +EAG+ V IVK++ IR V ++ VL Sbjct: 15 ILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVL 74 Query: 82 LTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSAAILSRAIAGTIGSTAV 141 +TGGTG++ D EA+ L D+ + GFGE+FR+LSF ++IG++ + SRA+AG T + Sbjct: 75 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSF-EEIGTSTLQSRAVAGVANKTLI 133 Query: 142 FSMPGSTGAIKLAMERLIIPEL 163 F+MPGST A + A E +I P+L Sbjct: 134 FAMPGSTKACRTAWENIIAPQL 155 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,130,549 Number of extensions: 563360 Number of successful extensions: 2785 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 2752 Number of HSP's successfully gapped: 31 Length of query: 174 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 75 Effective length of database: 26,960,365 Effective search space: 2022027375 Effective search space used: 2022027375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 112 (47.8 bits)