BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0004.p
         (178 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1381 [V] COG1131 ABC-type multidrug transport system, ATPase c...    62   6e-10
RSc2106 [E] COG1126 ABC-type polar amino acid transport system, ...    61   7e-10
SP1704 [V] COG1131 ABC-type multidrug transport system, ATPase c...    60   1e-09
YPO2060 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com...    60   2e-09
STM2441 [P] COG1118 ABC-type sulfate/molybdate transport systems...    59   3e-09

>SP1381 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 249

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 19  LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLV- 77
           +IE    +K YG +  L+ ++L +E+G    LIG NG+GKST +  L  +   SSG ++ 
Sbjct: 1   MIEFQNVSKLYGDKEALSNLNLQIENGEIMGLIGHNGAGKSTTIKSLVSIISPSSGRILV 60

Query: 78  ----RYERRLT----IGY---APEAFPGLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXX 126
                 E RL     IGY   +P+ F  L+ TA ++                        
Sbjct: 61  DGQELSENRLAIKRKIGYVADSPDLF--LRLTANEFWELIASSYDLSRSDLEASLARLLN 118

Query: 127 VFHLEEFRRQSMAGFSKGMLQKVNLIQSLLA 157
           VF   E R Q +   S GM QKV +I +LL+
Sbjct: 119 VFDFAENRYQVIETLSHGMRQKVFVIGALLS 149


>RSc2106 [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component
          Length = 245

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query: 18 PLIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLV 77
          PL++L    K YG   VL  V L VESG   A+IGR+GSGKSTLL  + GL  I  G +V
Sbjct: 2  PLVDLCAVHKHYGNNHVLKGVDLRVESGQVVAIIGRSGSGKSTLLRSINGLEAIDDGQIV 61


>SP1704 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 210

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 20 IELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78
          +E+    K YG+RP+LN+++L+ +SG    L G NGSGK+ LL ILAG  K+  G +++
Sbjct: 3  LEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSGKTVLLKILAGYIKLDKGKVLQ 61


>YPO2060 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component
          Length = 253

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78
          L+ L + +  +G R VLN++SL +  G    L+G NG+GKSTL+ ++ GL   SSG+LVR
Sbjct: 5  LVTLNKISVTFGSRRVLNDISLSLRPGKILTLLGPNGAGKSTLVRVVLGLIPPSSGSLVR 64

Query: 79 YERRLTIGYAPEAF 92
           E  L IGY P+  
Sbjct: 65 -EPGLRIGYVPQKL 77


>STM2441 [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase
          component
          Length = 365

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 20 IELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTL 76
          IE+ R  K +GR  VLN++SL + SG   AL+G +GSGK+TLL I+AGL   SSG +
Sbjct: 3  IEIARIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQSSGHI 59


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,676,627
Number of extensions: 272366
Number of successful extensions: 13137
Number of sequences better than 1.0e-05: 255
Number of HSP's gapped: 13154
Number of HSP's successfully gapped: 257
Length of query: 178
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 79
Effective length of database: 26,960,365
Effective search space: 2129868835
Effective search space used: 2129868835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)