BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0027.p (197 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3668 [D] COG0424 Nucleotide-binding protein implicated in inh... 153 1e-37 VC0418 [D] COG0424 Nucleotide-binding protein implicated in inhi... 147 8e-36 ZyhdE [D] COG0424 Nucleotide-binding protein implicated in inhib... 142 2e-34 ECs4120 [D] COG0424 Nucleotide-binding protein implicated in inh... 142 2e-34 yhdE [D] COG0424 Nucleotide-binding protein implicated in inhibi... 141 6e-34 >YPO3668 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Length = 197 Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/186 (50%), Positives = 117/186 (62%), Gaps = 5/186 (2%) Query: 2 IILASGSPRRRELLALLGLPFEVISSDADESTPPGLAPAEIVRRLALRKAEAVRPSVGER 61 + LAS SPRRRELLALL LPFEV+ ++ +E PG + V+RLA KA A +V + Sbjct: 4 LYLASASPRRRELLALLDLPFEVLKTEVEEQRHPGESAQVYVQRLAQDKARA-GVAVAPQ 62 Query: 62 GAVIVGSDTIVVLGNQVLGKPADKQDSRNMLQLLQGRTHQVYTGVACIGLPEGKTVVEHR 121 ++G+DTIVVL QVL KP DK+ ++ +L L G+ HQV T VA L + + ++ Sbjct: 63 DLPVLGADTIVVLNGQVLEKPRDKEHAQQILSALSGQKHQVMTAVA---LADRQNMLSAM 119 Query: 122 V-TSVTMRAMSMDEISAYIATGEPADKAGSYAIQGLGATLVERIEGCYFNVVGLPLSLLG 180 V T VT R +S EIS YIATGEP DKAG+Y IQG G V I G Y VVGLPL Sbjct: 120 VVTDVTFRVLSPLEISDYIATGEPMDKAGAYGIQGKGGCFVRAIAGSYHAVVGLPLVETH 179 Query: 181 EMLSGF 186 E+LS F Sbjct: 180 ELLSHF 185 >VC0418 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Length = 205 Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 110/187 (58%), Gaps = 7/187 (3%) Query: 2 IILASGSPRRRELLALLGLPFEVISSDADESTPPGLAPAEIVRRLALRKAEAVRPSVGER 61 ++LASGSPRRRELLA +G FEV+ + +E +PA+ V RL+ R ++ Sbjct: 24 LVLASGSPRRRELLAQMGYQFEVVVPNVEEKRAAAESPAQYVERLS-RDKALAGAALVAA 82 Query: 62 GAVIVGSDTIVVLGNQVLGKPADKQDSRNMLQLLQGRTHQVYTGVA--CIGLPEGKTVVE 119 AV++GSDTIVV QVL KP D D++ ML L G HQV TGV+ C G+ V Sbjct: 83 EAVVIGSDTIVVKDQQVLEKPRDFADAKRMLLKLSGSQHQVMTGVSVTCRGITHSVVVT- 141 Query: 120 HRVTSVTMRAMSMDEISAYIATGEPADKAGSYAIQGLGATLVERIEGCYFNVVGLPLSLL 179 T V + +S EI AY +GEP DKAGSY IQGLG V RIEG Y VVGLPL Sbjct: 142 ---TEVWFKTLSEQEIEAYWQSGEPCDKAGSYGIQGLGGRFVTRIEGSYHAVVGLPLYET 198 Query: 180 GEMLSGF 186 ++L F Sbjct: 199 DQLLHKF 205 >ZyhdE [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Length = 197 Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 2 IILASGSPRRRELLALLGLPFEVISSDADESTPPGLAPAEIVRRLALRKAEAVRPSVGER 61 + LASGSPRR+ELLA LG+ FE I + +E P + + V RLA KA A + Sbjct: 4 LYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQTA-K 62 Query: 62 GAVIVGSDTIVVLGNQVLGKPADKQDSRNMLQLLQGRTHQVYTGVACIGLPEGKTVVEHR 121 ++G+DTIV+L +VL KP D + + ML+ L G+THQV T VA L + + +++ Sbjct: 63 DLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVA---LADSQHILDCL 119 Query: 122 V-TSVTMRAMSMDEISAYIATGEPADKAGSYAIQGLGATLVERIEGCYFNVVGLPLSLLG 180 V T VT R ++ ++I+ Y+A+ EP DKAG+Y IQGLG V +I G Y VVGLPL Sbjct: 120 VVTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETY 179 Query: 181 EMLSGFG 187 E+LS F Sbjct: 180 ELLSNFN 186 >ECs4120 [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Length = 197 Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 5/187 (2%) Query: 2 IILASGSPRRRELLALLGLPFEVISSDADESTPPGLAPAEIVRRLALRKAEAVRPSVGER 61 + LASGSPRR+ELLA LG+ FE I + +E P + + V RLA KA A + Sbjct: 4 LYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQTA-K 62 Query: 62 GAVIVGSDTIVVLGNQVLGKPADKQDSRNMLQLLQGRTHQVYTGVACIGLPEGKTVVEHR 121 ++G+DTIV+L +VL KP D + + ML+ L G+THQV T VA L + + +++ Sbjct: 63 DLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVA---LADSRHILDCL 119 Query: 122 V-TSVTMRAMSMDEISAYIATGEPADKAGSYAIQGLGATLVERIEGCYFNVVGLPLSLLG 180 V T VT R ++ ++I+ Y+A+GEP DKAG+Y IQGLG V +I G Y VVGLPL Sbjct: 120 VVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFVRKINGSYQAVVGLPLVETY 179 Query: 181 EMLSGFG 187 E+LS F Sbjct: 180 ELLSNFN 186 >yhdE [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation Length = 197 Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 2 IILASGSPRRRELLALLGLPFEVISSDADESTPPGLAPAEIVRRLALRKAEAVRPSVGER 61 + LASGSPRR+ELLA LG+ FE I + +E P + + V RLA KA A + Sbjct: 4 LYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQTA-K 62 Query: 62 GAVIVGSDTIVVLGNQVLGKPADKQDSRNMLQLLQGRTHQVYTGVACIGLPEGKTVVEHR 121 ++G+DTIV+L +VL KP D + + ML+ L G+THQV T VA L + + +++ Sbjct: 63 DLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVA---LADSQHILDCL 119 Query: 122 V-TSVTMRAMSMDEISAYIATGEPADKAGSYAIQGLGATLVERIEGCYFNVVGLPLSLLG 180 V T VT R ++ ++I+ Y+A+ EP DKAG+Y IQGLG V +I G Y VVGLPL Sbjct: 120 VVTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETY 179 Query: 181 EMLSGFG 187 E+LS F Sbjct: 180 ELLSNFN 186 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,591,592 Number of extensions: 622141 Number of successful extensions: 2216 Number of sequences better than 1.0e-05: 319 Number of HSP's gapped: 1585 Number of HSP's successfully gapped: 319 Length of query: 197 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 96 Effective length of database: 26,729,697 Effective search space: 2566050912 Effective search space used: 2566050912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)