BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0026.p (209 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value radC [L] COG2003 DNA repair proteins 166 3e-41 ZradC [L] COG2003 DNA repair proteins 166 3e-41 ECs4513 [L] COG2003 DNA repair proteins 166 3e-41 VC0217 [L] COG2003 DNA repair proteins 151 6e-37 >radC [L] COG2003 DNA repair proteins Length = 224 Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 129/209 (61%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 M+ +G +L+ ELLA+ LRTGTR + + +A+ ML GSL GL E+ + + GIG Sbjct: 16 MLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIG 75 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 AK QLK EL RR N R+ E + SP+ E L QL ++E F+ +FL++++ Sbjct: 76 VAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHR 135 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI L G+LN VHPRE+ R A+K +++A+I AHNHPSG PS D +T R+++ Sbjct: 136 VITHRRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIK 195 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 + + + + VLDH++IG ++S E+G++ Sbjct: 196 SCQFMDLRVLDHIVIGRGEYVSFAERGWI 224 >ZradC [L] COG2003 DNA repair proteins Length = 224 Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 129/209 (61%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 M+ +G +L+ ELLA+ LRTGTR + + +A+ ML GSL GL E+ + + GIG Sbjct: 16 MLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIG 75 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 AK QLK EL RR N R+ E + SP+ E L QL ++E F+ +FL++++ Sbjct: 76 VAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHR 135 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI L G+LN VHPRE+ R A+K +++A+I AHNHPSG PS D +T R+++ Sbjct: 136 VITHRRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIK 195 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 + + + + VLDH++IG ++S E+G++ Sbjct: 196 SCQFMDLRVLDHIVIGRGEYVSFAERGWI 224 Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 129/209 (61%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 M+ +G +L+ ELLA+ LRTGTR + + +A+ ML GSL GL E+ + + GIG Sbjct: 16 MLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIG 75 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 AK QLK EL RR N R+ E + SP+ E L QL ++E F+ +FL++++ Sbjct: 76 VAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHR 135 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI L G+LN VHPRE+ R A+K +++A+I AHNHPSG PS D +T R+++ Sbjct: 136 VITHRRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIK 195 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 + + + + VLDH++IG ++S E+G++ Sbjct: 196 SCQFMDLRVLDHIVIGRGEYVSFAERGWI 224 >ECs4513 [L] COG2003 DNA repair proteins Length = 673 Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 14/209 (6%), Positives = 42/209 (20%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 + I + + A+ + V + + ++ + Sbjct: 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 + + + L+ L + + + Sbjct: 76 ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQL 135 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 + S + + + + + + + I L + LLQ Sbjct: 136 ISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQ 195 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 A E V + + Sbjct: 196 ANEEVRKRWQNKIRYLLVDEYQDTNTSQY 224 >VC0217 [L] COG2003 DNA repair proteins Length = 673 Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 14/209 (6%), Positives = 42/209 (20%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 + I + + A+ + V + + ++ + Sbjct: 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 + + + L+ L + + + Sbjct: 76 ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQL 135 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 + S + + + + + + + I L + LLQ Sbjct: 136 ISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQ 195 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 A E V + + Sbjct: 196 ANEEVRKRWQNKIRYLLVDEYQDTNTSQY 224 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,849,097 Number of extensions: 535209 Number of successful extensions: 4276 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 4276 Number of HSP's successfully gapped: 21 Length of query: 209 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 107 Effective length of database: 26,614,363 Effective search space: 2847736841 Effective search space used: 2847736841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)