BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0004.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ML0055_2 [O] COG0464 ATPases of the AAA+ class 191 1e-48 AGc1512 [K] COG3609 Predicted transcriptional regulators contain... 97 3e-20 AGc1510_1 [T] COG2200 FOG: EAL domain 97 3e-20 AGc1518 [R] COG3668 Plasmid stabilization system protein 97 3e-20 AGc1515 [C] COG1012 NAD-dependent aldehyde dehydrogenases 97 3e-20 >ML0055_2 [O] COG0464 ATPases of the AAA+ class Length = 280 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 17/257 (6%), Positives = 43/257 (16%), Gaps = 11/257 (4%) Query: 29 ISNVFLATANGATDYSVIPIENTIEGSVSLHIDWLINEVNLPMQAEWIFPSIQNLISNPQ 88 + + L + V + Q+ + + Sbjct: 32 QPSKHMIFTGPPGTGKTTIARVVANILAGLGVISEPKLVETSRKDFVAEYEGQSAVKAAK 91 Query: 89 EFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDHAPWAELESVGSTSEAVEIVSNNPGKG 148 + + A L RD + T A + Sbjct: 92 T----------IDLALGGVLFIDEAYALVQERDGRTDPFGQEALDTLLARMENDRDRLVV 141 Query: 149 WAAIGTALGAATHGLEVVERQVTDHNNNYTRFVLVGHQKLELPRKSSGDKTSILVTLPED 208 A ++ R + + ++ + D + Sbjct: 142 IIAGYSSDIDRLLETNEGLRSRFATRIEFDTYSPDELLEIAKVIATDADSSLSAEASKNL 201 Query: 209 FPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTYYFYIDVMEPIESVL-LPAAIEEINAL 267 A R R ++ + D+ + Sbjct: 202 LEAAKQLAQRTLRGRPALDVAGNGRYARQLVEAAEQCRDMRLARGVDIEQLDVDRLQEIN 261 Query: 268 GCQVRILGSYPTYTYEE 284 G + + Sbjct: 262 GSDMAEAIATVHAHLNI 278 >AGc1512 [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Length = 370 Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 12/275 (4%), Positives = 43/275 (15%), Gaps = 16/275 (5%) Query: 5 GSVSHEALLHLFGD-EPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDWL 63 + + + N + + ++ Sbjct: 15 LPGWGQDDPRKLFPAMATIL---SHLRNAKPYRTGALGITAAELVSLLELAERG-QVNSP 70 Query: 64 INEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDHA 123 F + ++ I Sbjct: 71 EQARQFFETNSVPFRISPAQGKSGFVTAF--------YEPELEVSATPDDVWRYPIYRRP 122 Query: 124 PWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVLV 183 ++ + + + G + ++ + + R + Sbjct: 123 -PELVDI-DNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVD 180 Query: 184 GHQKLELPRKSSGD-KTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTY 242 +I G + + R L + Sbjct: 181 LFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLA 240 Query: 243 YFYIDVMEPIESVLLPAAIEEINALGCQVRILGSY 277 +V + E + G + + + Sbjct: 241 DHPDEVDGVLWHNRSYIFFREADVAGLDMGPIAAA 275 >AGc1510_1 [T] COG2200 FOG: EAL domain Length = 286 Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 14/275 (5%), Positives = 41/275 (14%), Gaps = 16/275 (5%) Query: 5 GSVSHEALLHLFGD-EPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDWL 63 S + L + I + + ++ + Sbjct: 15 ASGQMFPMAKLVLETAFQPI---VEATTGTIFGYESLMRGHDRLGFSSPLALLD-QAAAD 70 Query: 64 INEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDHA 123 + + + + + + L + H Sbjct: 71 GELKAFEQMLASRALAKFSTLPDFSSATL--------FLNLDVRLIPHGDVILDKLVGHL 122 Query: 124 PWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVLV 183 S+ + G ++ + Sbjct: 123 -ARAGIP-ASSICFELSERFDNTSVPEFTSLIARMRKEGFKLAIDDFGAGHGEMKLLCDF 180 Query: 184 GHQKLELPRKSSGD-KTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTY 242 L++ R + VL + E ++ Sbjct: 181 PLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL 240 Query: 243 YFYIDVMEPIESVLLPAAIEEINALGCQVRILGSY 277 + +P R Sbjct: 241 VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQT 275 >AGc1518 [R] COG3668 Plasmid stabilization system protein Length = 370 Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 12/275 (4%), Positives = 43/275 (15%), Gaps = 16/275 (5%) Query: 5 GSVSHEALLHLFGD-EPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDWL 63 + + + N + + ++ Sbjct: 15 LPGWGQDDPRKLFPAMATIL---SHLRNAKPYRTGALGITAAELVSLLELAERG-QVNSP 70 Query: 64 INEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDHA 123 F + ++ I Sbjct: 71 EQARQFFETNSVPFRISPAQGKSGFVTAF--------YEPELEVSATPDDVWRYPIYRRP 122 Query: 124 PWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVLV 183 ++ + + + G + ++ + + R + Sbjct: 123 -PELVDI-DNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVD 180 Query: 184 GHQKLELPRKSSGD-KTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTY 242 +I G + + R L + Sbjct: 181 LFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLA 240 Query: 243 YFYIDVMEPIESVLLPAAIEEINALGCQVRILGSY 277 +V + E + G + + + Sbjct: 241 DHPDEVDGVLWHNRSYIFFREADVAGLDMGPIAAA 275 >AGc1515 [C] COG1012 NAD-dependent aldehyde dehydrogenases Length = 370 Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 12/275 (4%), Positives = 43/275 (15%), Gaps = 16/275 (5%) Query: 5 GSVSHEALLHLFGD-EPVNIEHHKLISNVFLATANGATDYSVIPIENTIEGSVSLHIDWL 63 + + + N + + ++ Sbjct: 15 LPGWGQDDPRKLFPAMATIL---SHLRNAKPYRTGALGITAAELVSLLELAERG-QVNSP 70 Query: 64 INEVNLPMQAEWIFPSIQNLISNPQEFVDAEGHKDYSKVVKILSHPVAMAQCLQFIRDHA 123 F + ++ I Sbjct: 71 EQARQFFETNSVPFRISPAQGKSGFVTAF--------YEPELEVSATPDDVWRYPIYRRP 122 Query: 124 PWAELESVGSTSEAVEIVSNNPGKGWAAIGTALGAATHGLEVVERQVTDHNNNYTRFVLV 183 ++ + + + G + ++ + + R + Sbjct: 123 -PELVDI-DNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVD 180 Query: 184 GHQKLELPRKSSGD-KTSILVTLPEDFPGALHQVLAAFAWRRLNLSRIESRPTKKKLGTY 242 +I G + + R L + Sbjct: 181 LFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLA 240 Query: 243 YFYIDVMEPIESVLLPAAIEEINALGCQVRILGSY 277 +V + E + G + + + Sbjct: 241 DHPDEVDGVLWHNRSYIFFREADVAGLDMGPIAAA 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,216,563 Number of extensions: 948436 Number of successful extensions: 1497 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 1479 Number of HSP's successfully gapped: 9 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)