BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0018.p (400 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2908_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH re... 187 3e-47 PA2664_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH red... 183 4e-46 SMa1191_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH re... 179 5e-45 hmp_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reduct... 169 7e-42 ECs3418_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH re... 169 7e-42 >YPO2908_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Length = 346 Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 13/246 (5%), Positives = 47/246 (19%), Gaps = 18/246 (7%) Query: 161 FKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGEQYTMIRQYSLSQA 220 + E + + + + + ++ + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 221 SKPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTVEVSPPAGEFLLDTAKTTPVAFISG 280 + + + + + + ++V+ + LD S Sbjct: 63 GLTETYVGNWLAKH----GSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSL 118 Query: 281 GVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIEKHALNMSNIQYKTYFSDG 340 T + + + P L + +S A AL K + Sbjct: 119 KRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG- 177 Query: 341 PDGQITREA---------LEAYV----DPTGDAYVCGPVPFMEAMIRNLLAMGMKEEQIH 387 + + + + + + + Sbjct: 178 VSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG 237 Query: 388 YEFFGP 393 + Sbjct: 238 FGTLTG 243 >PA2664_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Length = 346 Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 15/250 (6%), Positives = 39/250 (15%), Gaps = 18/250 (7%) Query: 158 WNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGEQYTMIRQYSL 217 + + + T + + + A LI + M Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAE--MYPVPPR 58 Query: 218 SQASKPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTVEVSPPAGEFLLDTAKTTPVAF 277 + E + +G + G + Sbjct: 59 PETQGLTETYVGNWLAK----HGSREKLIIASKVSGPSRNNDKGIRPDQALDR-KNIREA 113 Query: 278 ISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIEKHALNMSNIQYKTYF 337 + + + + S + + +Y+ Sbjct: 114 LHDSLKRLQTDYLDLYQVHWP--QRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAG 171 Query: 338 SD-------GPDGQITREALEAYV--DPTGDAYVCGPVPFMEAMIRNLLAMGMKEEQIHY 388 + R A P + L + E Sbjct: 172 KIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL 231 Query: 389 EFFGPALQLE 398 + Sbjct: 232 AYSCLGFGTL 241 >SMa1191_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Length = 346 Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 12/255 (4%), Positives = 47/255 (18%), Gaps = 17/255 (6%) Query: 157 GWNFFKPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGEQYTMIRQYS 216 + E + + + + + ++ + + Sbjct: 2 QY---HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPR 58 Query: 217 LSQASKPDEFRISVKREADN-DPNGVVSVYLHTQVNEGDTVEVSPPAGEFLLDTAKTTPV 275 + + + + + + + S N + + A + Sbjct: 59 PETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSL 118 Query: 276 AFISGGVGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIEKHALNMSNIQYKT 335 + + + + + + D I+Y Sbjct: 119 KRLQTDYLDLYQVHWPQR-PTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 336 YFS-------DGPD----GQITREAL-EAYVDPTGDAYVCGPVPFMEAMIRNLLAMGMKE 383 + + R + ++ G + LLA Sbjct: 178 VSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG 237 Query: 384 EQIHYEFFGPALQLE 398 + + Sbjct: 238 FGTLTGKYLNGAKPA 252 >hmp_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Length = 346 Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 13/244 (5%), Positives = 45/244 (18%), Gaps = 16/244 (6%) Query: 162 KPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGEQYTMIRQYSLSQAS 221 E + + + + + ++ + + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 222 KPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTVEVSPPAGEFLLDTAKTTPVAFISGG 281 + + + + + + ++V+ + LD S Sbjct: 64 LTETYVGNWLAKH----GSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLK 119 Query: 282 VGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIEKHALNMSNIQYKTYF---- 337 T + + + P L + +S A AL K + Sbjct: 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 338 -SDGPDGQITREAL-------EAYVDPTGDAYVCGPVPFMEAMIRNLLAMGMKEEQIHYE 389 + + + + + + + Sbjct: 180 NETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFG 239 Query: 390 FFGP 393 Sbjct: 240 TLTG 243 >ECs3418_2 [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Length = 346 Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 13/244 (5%), Positives = 45/244 (18%), Gaps = 16/244 (6%) Query: 162 KPFTVVRKEQESESITSFYLKPADGSGVPAFKPGQYISVRVLIPGEQYTMIRQYSLSQAS 221 E + + + + + ++ + + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 222 KPDEFRISVKREADNDPNGVVSVYLHTQVNEGDTVEVSPPAGEFLLDTAKTTPVAFISGG 281 + + + + + + ++V+ + LD S Sbjct: 64 LTETYVGNWLAKH----GSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLK 119 Query: 282 VGITPMMSMLETVAVSTPDRPTVFLHAARNESLAAFGEDIEKHALNMSNIQYKTYF---- 337 T + + + P L + +S A AL K + Sbjct: 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 338 -SDGPDGQITREAL-------EAYVDPTGDAYVCGPVPFMEAMIRNLLAMGMKEEQIHYE 389 + + + + + + + Sbjct: 180 NETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFG 239 Query: 390 FFGP 393 Sbjct: 240 TLTG 243 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,915,151 Number of extensions: 1148240 Number of successful extensions: 2747 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 2650 Number of HSP's successfully gapped: 62 Length of query: 400 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 291 Effective length of database: 25,807,025 Effective search space: 7509844275 Effective search space used: 7509844275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)