BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0017.p
         (182 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhdE [K] COG1959 Predicted transcriptional regulator               160   7e-40
BH1057 [K] COG1959 Predicted transcriptional regulator                160   1e-39
RSc3397 [K] COG1959 Predicted transcriptional regulator               143   1e-34
RC0821 [K] COG1959 Predicted transcriptional regulator                121   5e-28
AGc3442 [G] COG0524 Sugar kinases, ribokinase family                  121   6e-28

>BS_yhdE [K] COG1959 Predicted transcriptional regulator
          Length = 197

 Score =  160 bits (406), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 14/143 (9%), Positives = 28/143 (19%)

Query: 19  MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78
           M        S R    L     +    +  I       ++    V     +       + 
Sbjct: 1   MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQT 60

Query: 79  RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138
                 L     +I  GEV+ +  D  H  +                        L   +
Sbjct: 61  AKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLV 120

Query: 139 QVLSEYTLQDLLLNKHDLQAIFQ 161
                +           + +   
Sbjct: 121 VTDVTFRTLTDEDIAGYVASDEP 143


>BH1057 [K] COG1959 Predicted transcriptional regulator
          Length = 146

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 111/143 (77%)

Query: 19  MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78
           M+LT YTD+SLR+L+YL  + + +LS+++ ++  Y+IS NHL KV++ELG+ G IET++G
Sbjct: 1   MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60

Query: 79  RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138
           R GGIRLAKAPE INIG VV++ ED+  LVECF+   N C ++P C LKGVL  AL AYL
Sbjct: 61  RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120

Query: 139 QVLSEYTLQDLLLNKHDLQAIFQ 161
           +VL +YTL+DLL N+ +LQA+ +
Sbjct: 121 RVLEQYTLKDLLTNEDELQALLK 143


>RSc3397 [K] COG1959 Predicted transcriptional regulator
          Length = 172

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 1/132 (0%)

Query: 19  MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78
           MRLT YTD+SLR L+Y+       L TIQ I++A+ I KNHL+K+   LGQ G++ TVRG
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDV-LVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRG 59

Query: 79  RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138
           R GGI L +    INIG+VVR  E DF LVECF  + N+C I+  CGL+GVL  AL AY 
Sbjct: 60  RAGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYF 119

Query: 139 QVLSEYTLQDLL 150
           +VL  YTLQDL+
Sbjct: 120 EVLDTYTLQDLI 131


>RC0821 [K] COG1959 Predicted transcriptional regulator
          Length = 142

 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 93/135 (68%), Gaps = 1/135 (0%)

Query: 19  MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78
           M+LT +TD+ LR L+YL +K +  + ++++IS  ++IS NHL+KV H L Q GYI + +G
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPE-RICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKG 59

Query: 79  RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138
           +GGGI+LA  P  + +G+++ ++E +  +VECF+ + N+C I+ +C  K  +  A  A++
Sbjct: 60  KGGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFI 119

Query: 139 QVLSEYTLQDLLLNK 153
           + L+ YTL+D ++ K
Sbjct: 120 KTLNNYTLEDAMITK 134


>AGc3442 [G] COG0524 Sugar kinases, ribokinase family
          Length = 289

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 6/132 (4%), Positives = 18/132 (13%), Gaps = 1/132 (0%)

Query: 19  MRLTLYTDFSLRVLMYLGTKEQSELSTIQDISNAYHISKNHLMKVSHELGQAGYIETVRG 78
           M     +  +L +  ++      + S    I + +          +              
Sbjct: 1   MSSMADSRETLTINAFVVGYP-IKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIA 59

Query: 79  RGGGIRLAKAPELINIGEVVRRMEDDFHLVECFDPSGNNCPISPACGLKGVLGRALAAYL 138
                +   A                    +                 K           
Sbjct: 60  TLKEGKPGAAVGGNATIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGF 119

Query: 139 QVLSEYTLQDLL 150
               +       
Sbjct: 120 VSNLDERHPGWD 131


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,857,786
Number of extensions: 447185
Number of successful extensions: 876
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 47
Length of query: 182
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 82
Effective length of database: 26,845,031
Effective search space: 2201292542
Effective search space used: 2201292542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)