BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0013.p
         (149 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MT1200 [C] COG2180 Nitrate reductase delta subunit                     52   3e-07
Rv1163 [C] COG2180 Nitrate reductase delta subunit                     52   3e-07
STM1762 [C] COG2180 Nitrate reductase delta subunit                    47   8e-06

>MT1200 [C] COG2180 Nitrate reductase delta subunit
          Length = 346

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 2/60 (3%), Positives = 12/60 (20%)

Query: 66  NYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLPLMCEF 125
               T  +  +        +      +    ++           +    + + L    + 
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120


>Rv1163 [C] COG2180 Nitrate reductase delta subunit
          Length = 346

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 3/60 (5%), Positives = 8/60 (13%)

Query: 66  NYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLPLMCEF 125
                     +  +     K    ++                   P+  L          
Sbjct: 56  PPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALH 115


>STM1762 [C] COG2180 Nitrate reductase delta subunit
          Length = 346

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 4/65 (6%), Positives = 14/65 (21%)

Query: 62  EIQENYAATFDFQRDCALYMTYFKFEDAKERGQILAKLKILYEMYGLEMPEGELPDYLPL 121
              E    T  +  +        +      +    ++           +    + + L  
Sbjct: 57  PRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHD 116

Query: 122 MCEFL 126
             + L
Sbjct: 117 SLKRL 121


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,579,582
Number of extensions: 446485
Number of successful extensions: 586
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 7
Length of query: 149
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 52
Effective length of database: 27,191,033
Effective search space: 1413933716
Effective search space used: 1413933716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)