BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0359.0008.p (188 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA2179 [TK] COG2197 Response regulator containing a CheY-like re... 232 3e-61 BH3628 [TK] COG2197 Response regulator containing a CheY-like re... 132 3e-31 BS_degU [TK] COG2197 Response regulator containing a CheY-like r... 129 2e-30 CAC1455 [TK] COG2197 Response regulator containing a CheY-like r... 122 2e-28 CAC0174 [TK] COG2197 Response regulator containing a CheY-like r... 121 5e-28 >SA2179 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 217 Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 135/159 (84%), Gaps = 2/159 (1%) Query: 8 MKIVIADDHAMVRSGFSMILNFQDDIEVIGAAADGIEAYAMVAKRRPDILIMDLSMPPGE 67 MKIVIADDHA+VR+GFSMILN+Q+D+EV+ AADG+EAY V + +PD+L+MDLSMPPGE Sbjct: 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60 Query: 68 SGLIATGKIKEDYPDTKILILTMHDDEEYLFHVLKNGASGYVLKSAPDEELLLAIRTIYE 127 SGLIAT KI + +P+TKILILTM DDEEYLFHVL+NGA GY+LK+APDE+LLLAIRT+Y+ Sbjct: 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120 Query: 128 GGTYIHPKMATSLVREFIKKDK--TASTEDLFELLSKRE 164 G TY+ K+ TSLV EF+ TA+T D F++LSKRE Sbjct: 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRE 159 >BH3628 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 236 Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 105/163 (64%), Gaps = 4/163 (2%) Query: 4 NDPRMKIVIADDHAMVRSGFSMILNFQDDIEVIGAAADGIEAYAMVAKRRPDILIMDLSM 63 N+ +++IVI DDH + R G IL + + EV+ DG A +V PD+++MD++M Sbjct: 6 NENKIQIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVETYNPDVILMDINM 65 Query: 64 PPGESGLIATGKIKEDYPDTKILILTMHDDEEYLFHVLKNGASGYVLKSAPDEELLLAIR 123 P +G+ AT + + YPD K+L+L++HDDE Y+ HVLK GASGY+LK + L+ A++ Sbjct: 66 PKV-NGVEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVK 124 Query: 124 TIYEGGTYIHPKMATSLVREF---IKKDKTASTEDLFELLSKR 163 + +GG YIHPK+ +L++E+ + +D+ S+E F+ + R Sbjct: 125 VVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYR 167 >BS_degU [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 229 Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Query: 7 RMKIVIADDHAMVRSGFSMILNFQDDIEVIGAAADGIEAYAMVAKRRPDILIMDLSMPPG 66 ++ IVI DDH + R G IL+F+ EV+ DG EA +V PD++IMD++MP Sbjct: 3 KVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMP-N 61 Query: 67 ESGLIATGKIKEDYPDTKILILTMHDDEEYLFHVLKNGASGYVLKSAPDEELLLAIRTIY 126 +G+ AT ++ E YP++K++IL++HDDE Y+ H LK GA GY+LK + L+ A++ + Sbjct: 62 VNGVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVA 121 Query: 127 EGGTYIHPKMATSLVREF 144 EGG+Y+HPK+ +LV EF Sbjct: 122 EGGSYLHPKVTHNLVNEF 139 >CAC1455 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 89/137 (64%), Gaps = 1/137 (0%) Query: 8 MKIVIADDHAMVRSGFSMILNFQDDIEVIGAAADGIEAYAMVAKRRPDILIMDLSMPPGE 67 +K++IADD ++R ++L+ DIE++G A +G E V K +PD+++MD+ MP + Sbjct: 2 IKVLIADDQELIRQSLKIVLSANKDIEIVGTACNGNEVVESVRKYKPDVILMDVRMPEMD 61 Query: 68 SGLIATGKIKEDYPDTKILILTMHDDEEYLFHVLKNGASGYVLKSAPDEELLLAIRTIYE 127 G+ T IKE YP+ KI++LT DD+EY+F+ LK GASGY+LK +EL+ AI T+ Sbjct: 62 -GVQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVVN 120 Query: 128 GGTYIHPKMATSLVREF 144 GG I+P + + + F Sbjct: 121 GGAMINPDITAKVFKLF 137 >CAC0174 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 213 Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 10 IVIADDHAMVRSGFSMILNFQDDIEVIGAAADGIEAYAMVAKRRPDILIMDLSMPPGESG 69 ++I DD +VR G MIL ++ VIG A++G E ++ + P++++MD+ MP + G Sbjct: 4 VIIVDDQEIVREGLKMILGLNNEFNVIGEASNGAELLTLLEHQSPNVILMDIRMPVMD-G 62 Query: 70 LIATGKIKEDYPDTKILILTMHDDEEYLFHVLKNGASGYVLKSAPDEELLLAIRTIYEGG 129 + AT +KE+YPD K++ILT +++E++F VLKNGA GYVLK A +E+ +I+ EG Sbjct: 63 IEATRLVKENYPDLKVIILTTFNEDEFIFDVLKNGADGYVLKDAGSKEIFNSIKAACEGS 122 Query: 130 TYIHPKMATSLVREF--IKKDKTASTEDLFELLSKRE 164 ++P++ LV + K K ++L LL+ RE Sbjct: 123 VLLNPQVTLKLVNALNTLDKKKPLQEKNLLHLLTPRE 159 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,468,789 Number of extensions: 495379 Number of successful extensions: 1898 Number of sequences better than 1.0e-05: 186 Number of HSP's gapped: 1896 Number of HSP's successfully gapped: 186 Length of query: 188 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 88 Effective length of database: 26,845,031 Effective search space: 2362362728 Effective search space used: 2362362728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 112 (47.8 bits)