BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0359.0005.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0285_1 [T] COG2202 FOG: PAS/PAC domain                              122   1e-28
PA0575_2 [T] COG2202 FOG: PAS/PAC domain                              118   4e-27
aq_1442_4 [T] COG2202 FOG: PAS/PAC domain                              56   2e-08
VC0512_1 [T] COG2202 FOG: PAS/PAC domain                               54   1e-07
Zaer_1 [T] COG2202 FOG: PAS/PAC domain                                 48   5e-06

>PA0285_1 [T] COG2202 FOG: PAS/PAC domain
          Length = 311

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 21  DRLALTSEVFNSTAQGILVTDAAGVIKSVNPAFTRLTGFTEAEVLGKQPNVLKSGRQSQD 80
           D L   + VF+ST +G+LVTDA  VI  VNP+F R+TG+   +VLGK P +L+SGRQ Q 
Sbjct: 203 DHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRSGRQDQA 262

Query: 81  FYRSMWSEIRAKGVWQGEIWNRRKNGEEYLQLLNISAVKDETGVDIRYV 129
           FY+ +W  +R + VW GEIWNRRK+GE Y Q L+I AV+++ G    YV
Sbjct: 263 FYQRLWLALREQDVWSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYV 311


>PA0575_2 [T] COG2202 FOG: PAS/PAC domain
          Length = 485

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 78/116 (67%)

Query: 21  DRLALTSEVFNSTAQGILVTDAAGVIKSVNPAFTRLTGFTEAEVLGKQPNVLKSGRQSQD 80
           ++L   + VF STA+G+++TD    I +VN AF+ +TG++E E LG+ P++L SG+    
Sbjct: 369 EKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSSGQHDSS 428

Query: 81  FYRSMWSEIRAKGVWQGEIWNRRKNGEEYLQLLNISAVKDETGVDIRYVGTFSDIT 136
           FY +MW+++   G WQGEIWNRRK GE Y + L ISAV +  G    +VG F+DI+
Sbjct: 429 FYLAMWNQLERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVFADIS 484


>aq_1442_4 [T] COG2202 FOG: PAS/PAC domain
          Length = 110

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 25  LTSEVFNSTAQGILVTDAAGVIKSVNPAFTRLTGFTEAEVLGKQPNVLKSGRQSQDFYRS 84
           + S+    + + +L+TD  G I  VN     ++ ++  E++GK P + KSG   Q F+R 
Sbjct: 2   ILSKALEESREWVLITDREGKIIYVNKGVEEISKYSAEELIGKTPRIFKSGYHPQSFFRK 61

Query: 85  MWSEIRAKGVWQGEIWNRRKNGEEYLQLLNISAVKDETGVDIRYVGTFSD 134
           +W  I +   +     N+ K GE +     I  ++   G D+ ++G   D
Sbjct: 62  LWQTILSGKPFHAVFVNKNKYGELFYLDQKIIPLRTPEG-DLFFIGLCRD 110


>VC0512_1 [T] COG2202 FOG: PAS/PAC domain
          Length = 130

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 32  STAQGILVTDAA-GVIKSVNPAFTRLTGFTEAEVLGKQPNVLKSGRQSQDFYRSMWSEIR 90
           S++  IL T      I  VNP F +++GF E E++G+  N+++        +  MWS ++
Sbjct: 19  SSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPDMPPAAFAHMWSTLK 78

Query: 91  AKGVWQGEIWNRRKNGEEY 109
           +   W G + NR KNG+ Y
Sbjct: 79  SGRSWMGLVKNRCKNGDHY 97


>Zaer_1 [T] COG2202 FOG: PAS/PAC domain
          Length = 124

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 39  VTDAAGVIKSVNPAFTRLTGFTEAEVLGKQPNVLKSGRQSQDFYRSMWSEIRAKGVWQGE 98
            TD    I   N  F +++G+T  E+ G+  N+++     +  +  MW  ++    W G 
Sbjct: 23  TTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGI 82

Query: 99  IWNRRKNGEEY 109
           + NRRKNG+ Y
Sbjct: 83  VKNRRKNGDHY 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,155,345
Number of extensions: 325663
Number of successful extensions: 700
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)