BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0358.0005.p
         (212 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH1787 [K] COG1309 Transcriptional regulator                          65   8e-11
lin0926 [K] COG1309 Transcriptional regulator                          58   1e-08
alr1941 [K] COG1309 Transcriptional regulator                          53   4e-07
CAC0724 [K] COG1309 Transcriptional regulator                          49   6e-06

>MTH1787 [K] COG1309 Transcriptional regulator
          Length = 268

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 3/59 (5%), Positives = 11/59 (18%)

Query: 20 NKMILDTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVD 78
            +     A+     I           ++        +            +++L     
Sbjct: 8  IFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDT 66


>lin0926 [K] COG1309 Transcriptional regulator
          Length = 218

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 38/49 (77%)

Query: 25 DTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLL 73
          D + +++ A+I+L AEKGY G ST EIA  AGV+E T+FR++ +KK+LL
Sbjct: 23 DKQRRIVAASIELFAEKGYAGTSTNEIAKKAGVAEGTIFRHYKTKKDLL 71


>alr1941 [K] COG1309 Transcriptional regulator
          Length = 359

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 1/48 (2%), Positives = 7/48 (14%)

Query: 26 TKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLL 73
                   +   ++      +          +      +      L 
Sbjct: 14 RHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLE 61


>CAC0724 [K] COG1309 Transcriptional regulator
          Length = 185

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 20 NKMILDTKAKLMHAAIDLMAEKGYKGVSTKEIAATAGVSEMTLFRNFGSKKNLLDKAVDH 79
          N++   +K  L+ A +DLM EK Y  +S KEIA  A +S  T +RNF  K++LL +  ++
Sbjct: 6  NRIAEQSKKWLVQALLDLMREKPYSSISVKEIADRAQLSRRTFYRNFKIKEDLLSEYFNY 65


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,118,627
Number of extensions: 487961
Number of successful extensions: 1380
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1383
Number of HSP's successfully gapped: 9
Length of query: 212
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 110
Effective length of database: 26,614,363
Effective search space: 2927579930
Effective search space used: 2927579930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)