BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0352.0008.p
         (160 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ytaP [R] COG1073 Hydrolases of the alpha/beta superfamily           49   2e-06

>BS_ytaP [R] COG1073 Hydrolases of the alpha/beta superfamily
          Length = 299

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 1   MAGYRIYETKRALDYLQTRREVKXXXXXXXXXXXXXLVAGFTAALDQRIACAVVSGYANT 60
           M G  IY++  ALDY+Q+R +V+             L+A +TAALD RI   V     + 
Sbjct: 137 MWGMMIYDSLSALDYMQSRSDVQPDRIGTIGMSMGGLMAWWTAALDDRIKVCV--DLCSQ 194

Query: 61  FADSILTRNHCLDN-----YIPGILLEAEMPDLLGLIAPRGLFLESGDADHLFGPRGARM 115
               +L +   LD      Y+P +       ++  LIAPR      G  D L    G   
Sbjct: 195 VDHHVLIKTQNLDRHGFYYYVPSLAKHFSASEIQSLIAPRPHLSLVGVHDRLTPAEGVDK 254

Query: 116 ALARLESIYGAAHHSGQVEADFF 138
               L ++Y     +GQ  AD +
Sbjct: 255 IEKELTAVY-----AGQGAADCY 272


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,485,804
Number of extensions: 440658
Number of successful extensions: 851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 62
Effective length of database: 27,075,699
Effective search space: 1678693338
Effective search space used: 1678693338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 111 (47.4 bits)