BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0005.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2608 [K] COG2207 AraC-type DNA-binding domain-containing prot... 92 1e-18 CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing prot... 89 7e-18 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 82 1e-15 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 81 2e-15 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 80 4e-15 >CAC2608 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 284 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 17/275 (6%) Query: 10 KYHIEEGRYSIQHMKRKGITAMPRPHSHDLTELYYLKQGERVYFVDDRVITVHKGELILI 69 K I+ +SI H+ + T H HD E+YY GE + +D+++ ++ G L + Sbjct: 12 KNSIDTKYFSIAHLHSEEETM--SIHIHDCYEIYYSISGENQFLIDNKLYYINPGNLFAV 69 Query: 70 SSRELHSTASSEIAEFERILINYDPALLPP---SLQNEAIWFQGRGYRL---FKLNLREQ 123 + E H + + ERI+I+ P L S N F+ RG LN +Q Sbjct: 70 NEFESHYVSQVNNSTHERIVISIHPDFLKSLCTSKTNLTYCFKHRGSNFCHKVSLNKEQQ 129 Query: 124 DEAESLMSRMLEECRLQRSYYETSIITLFTELMILLQRSENISQAGGTKHPLH---HLVT 180 +++++ E + F ELMI L + G + P++ + + Sbjct: 130 SRFMYFINKIIGSHGFGADMIEYA---SFIELMIFL--TSLFINNGESLTPIYKYSNQIE 184 Query: 181 DVATYIRDHHREALTLEATASNFYISPSYLSRVFHRLTGFHFREYIVHVRVREAERLLAG 240 ++ YI D+ +T++ A +F++S SY+ R+F TG +YI R+ A+ LL+ Sbjct: 185 EIIRYINDNVTNDITVKHLAEHFFLSESYICRIFKLSTGTTINKYITARRISMAKALLSN 244 Query: 241 STGKIQEIASAVGFEHLSHFNKTFKKSTGLTPLQY 275 + I ++ GF S+F K+FKK+ G++P +Y Sbjct: 245 GSS-INDVYVKCGFNDYSNFLKSFKKAVGISPKKY 278 >CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 18/280 (6%) Query: 9 HKY----HIEEGRYSIQHMKRKGITAMPRPHSHDLTELYYLKQGERVYFVDDRVITVHKG 64 HKY ++ Y I H I ++ H HD E Y+ G+ Y ++ + ++ G Sbjct: 6 HKYMERQYMLSADYEIYHYSNNDIRSVS-IHHHDFYEFYFFISGDVTYLIEGKSYCLNSG 64 Query: 65 ELILISSRELH-STASSEIAEFERILINYDPALLPPSLQNE---AIWFQ-GRGYRLFKLN 119 +ILI+SRELH + +S+ +ERI++ L NE ++ F+ + + + Sbjct: 65 NIILINSRELHQAIINSQRENYERIVLWISRVFLQKLSSNEIDLSLCFESNKKKNVLIAD 124 Query: 120 LREQDEAESLMSRMLEECRLQRSYYETSIITLFTELMILLQRSENISQAGGTKHPLH--- 176 ++ +++++++ + YE TELM+ + N+ +G T+ + Sbjct: 125 FEQEKNIRAILNKIISLENYKAMGYELLYKAYITELMVNIY---NLEFSGDTQLSVDTKK 181 Query: 177 -HLVTDVATYIRDHHREALTLEATASNFYISPSYLSRVFHRLTGFHFREYIVHVRVREAE 235 +L+ ++ YI + E +T++ A FY+S +LSR F + TG YI+ ++ +A+ Sbjct: 182 SNLIDEIIEYITFNIEEDITIDKIAEQFYLSKFHLSREFKKYTGTTIHRYIIQKKLIQAK 241 Query: 236 RLLAGSTGKIQEIASAVGFEHLSHFNKTFKKSTGLTPLQY 275 L+ I ++ GF S+F + FK +TP Q+ Sbjct: 242 ELILKDIS-ITDVYKKCGFGDYSNFFRAFKNEYKITPKQF 280 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 66/105 (62%) Query: 172 KHPLHHLVTDVATYIRDHHREALTLEATASNFYISPSYLSRVFHRLTGFHFREYIVHVRV 231 K + + V TYI +H+ E ++L++ AS FY++P Y+ ++F + G +F+EY++ +R+ Sbjct: 416 KENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRM 475 Query: 232 REAERLLAGSTGKIQEIASAVGFEHLSHFNKTFKKSTGLTPLQYR 276 EA++LL + ++ E+A VGF +F F+K +TP +YR Sbjct: 476 NEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYR 520 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 61/104 (58%) Query: 179 VTDVATYIRDHHREALTLEATASNFYISPSYLSRVFHRLTGFHFREYIVHVRVREAERLL 238 + + YI +HH E L+L A+ F+ +PSYLS F + F EY+ VR+R+A+ L Sbjct: 402 IQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWL 461 Query: 239 AGSTGKIQEIASAVGFEHLSHFNKTFKKSTGLTPLQYRKEARSH 282 ST I EI + VG+ S+F K FKK TG+ P +YR+E H Sbjct: 462 KSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRYRRENAEH 505 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 45/269 (16%) Query: 35 HSHDLTELYYLKQGERVYFVDDRVITVHKGELILISSRELHSTASSEIAEFERILINYDP 94 H HD E+ + +G +Y ++ + + KG++++ + H YD Sbjct: 30 HHHDFLEISIICEGNVIYDIEGERVALEKGDMLIFNPGVNH----------------YD- 72 Query: 95 ALLPPSLQNEAIWFQGRGYRLFKLN-------------LREQDEAESLMS---RMLEECR 138 + P + N + G+R F L LR++++ +++S +++EE Sbjct: 73 -ITEPGMTNAQLHI---GFRNFALEGYSRNTFPFKKAFLRKKEDESAILSISKQIIEEKD 128 Query: 139 LQRSYYETSIITLFTELMILLQRSENISQ--AGGTK-----HPLHHLVTDVATYIRDHHR 191 ++ Y+ + +L+I + R Q G K LV ++ Y+ HH Sbjct: 129 AEKPGYDLILKAFVMQLIIHVLREATPEQLENNGVKLSTDEQQKQMLVNEIIHYMEKHHT 188 Query: 192 EALTLEATASNFYISPSYLSRVFHRLTGFHFREYIVHVRVREAERLLAGSTGKIQEIASA 251 E ++L + YISP+Y+S+VF TG Y++ +R+ AE LL +++ A+ Sbjct: 189 EDVSLSTLSQTMYISPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVTVKQAANM 248 Query: 252 VGFEHLSHFNKTFKKSTGLTPLQ-YRKEA 279 VG+ +F+K FKK G P + +RK + Sbjct: 249 VGYNDAYYFSKLFKKYYGFPPSENWRKSS 277 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,583,494 Number of extensions: 778371 Number of successful extensions: 4661 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 4660 Number of HSP's successfully gapped: 78 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)