BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0352.0003.p (521 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2802 [G] COG3507 Beta-xylosidase 355 1e-97 BH3683 [G] COG3507 Beta-xylosidase 334 3e-91 CC0989 [G] COG3507 Beta-xylosidase 322 8e-88 BS_xynB [G] COG3507 Beta-xylosidase 288 1e-77 CAC3452 [G] COG3507 Beta-xylosidase 281 1e-75 >CC2802 [G] COG3507 Beta-xylosidase Length = 548 Score = 355 bits (910), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 203/515 (39%), Positives = 284/515 (55%), Gaps = 27/515 (5%) Query: 4 FRNPVLPGFYPDPSAIRVGEDYYLVTSSFEFFPGVPIFHSKDLVNWRQLGHVLDRPSQLN 63 +RNPV+ GFYPDPS R G+D+YLV S+F +FPG+P+FHS DLV+W Q+G+ +DRP L+ Sbjct: 35 YRNPVVQGFYPDPSVTRAGKDFYLVNSTFAWFPGLPVFHSTDLVHWEQIGNAIDRPGMLD 94 Query: 64 LDHTIPSMGIWAPTLRYHEGVFYMITTYVDNDKNQHNFYVTATDPAGDWSDPVWLEDAPG 123 S ++AP ++ H+G+FY++ T VD N+ +TA DP G WSDPVWL G Sbjct: 95 FKRLGLSRAVFAPAIQAHQGMFYILNTCVDCG---GNYLITAKDPKGPWSDPVWLPKVGG 151 Query: 124 IDSSLFFDDD---GKVYYTGNRVPPEGQDYPKHMDIWLQEIDLSQGRLIGPKHSIWQGAL 180 ID S+FFDD+ G+V+ N PP +YP H +W+ E D +GP + + Sbjct: 152 IDPSIFFDDEDGGGRVWIVNNDGPPGPPEYPGHRALWIHEYDPKTQTTVGPATLLLDKGV 211 Query: 181 KVAHA---QEGPHIYKIGAWYYVLIAEGGTGHTHAITIARSKSVTGPYEGHKANPILTHR 237 A EGPHI K WYY+ AEGGT H+ + RSKSVTGPY + NPILT R Sbjct: 212 DPATKPIWPEGPHILKKDGWYYLTAAEGGTAEGHSQVVLRSKSVTGPYVPYTNNPILTQR 271 Query: 238 HL--GRAYPIVNVGHGELVETQHGDWWMFCLASRTCGGYYRNLGRETFLTPVIWENEWPV 295 L R PI + GH ++V+T G WW LA R G N GRETFL PV W++ WPV Sbjct: 272 DLPRDRPLPITSAGHADIVDTPDGKWWATFLAVRPYGDDLYNTGRETFLLPVEWKDGWPV 331 Query: 296 VNPGKGVLELETPAPDLPETRWP----ELPARDEFTGSELGLIWNFLRTPRGEFWSLTEK 351 + + AP LP + A + F G EL + W +R P +WS+ K Sbjct: 332 ILENGKTIPYVADAPKLPALKTAPTSGPFKAAETFEGPELPMSWMTMRIPSKRWWSV--K 389 Query: 352 PGFLRLHLKAERLSEIANPSFIGRRQQHLSFRAAADMTFRPAAEGEVAGLVLLQNADYHF 411 G L L + +R+ PS RRQQH++ + + F P A+G+ AGLV +QN D+++ Sbjct: 390 DGTLSLEARKDRVGGHEQPSIWARRQQHMNASVSTTVRFDPKADGDKAGLVAVQNDDFYW 449 Query: 412 RYEYGLEAGERVLQLIQRKGGSEQLLASVPYPQDQVQ--------LKVEARGQEYSFYYR 463 + ++AG + L ++++ S+ L + V LK+ ARG F Y Sbjct: 450 -FVGLVQAGGKTLVRVEKRTSSKDPLDGAVVAEKPVSLKSGQSLDLKIAARGGALDFAY- 507 Query: 464 SSEAAKWTAFFERADGRVLSTDLAGGFTGAYIGMY 498 ++ +W ADG LST +AGGF G +G+Y Sbjct: 508 ATAPGQWQTLKADADGTTLSTKVAGGFVGTMLGVY 542 >BH3683 [G] COG3507 Beta-xylosidase Length = 528 Score = 334 bits (856), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 208/534 (38%), Positives = 303/534 (56%), Gaps = 21/534 (3%) Query: 1 MRTFRNPVLPGFYPDPSAIRVGEDYYLVTSSFEFFPGVPIFHSKDLVNWRQLGHVLDRPS 60 + +NP+LPGF+PDPS +RVG+DYY+ TS+FE+FPGV I HS+DL +WR + L R S Sbjct: 2 VNRIQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTS 61 Query: 61 QLNLDHTIPSMGIWAPTLRYHEGVFYMITTYVDN----DKNQHNFYVTATDPAGDWSDPV 116 QL++ + S GIWAP L YH+G FY+I T V K+ HN+ VTA + G WSDP+ Sbjct: 62 QLDMKGNMNSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPI 121 Query: 117 WLEDAPGIDSSLFFDDDGKVYYTGNRVPPEGQDYPKHMDIWLQEIDLSQGRLIGPKHSIW 176 +L ++ G D SLF DDDG+ + ++P I LQE ++ +L+GP +I+ Sbjct: 122 YL-NSSGFDPSLFHDDDGRKWLVNMIWDYRKGNHP-FAGIILQEYSEAEQKLVGPVKNIY 179 Query: 177 QGALKVAHAQEGPHIYKIGAWYYVLIAEGGTGHTHAITIARSKSVTGPYEGHKANPILTH 236 +G EGPH+YK +YY+L+AEGGT + HA T+ARS+S+ GPYE + P++T Sbjct: 180 KGT--DIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVT- 236 Query: 237 RHLGR-AYPIVNVGHGELVETQHGDWWMFCLASRTCGGYYRNLGRETFLTPVIW-ENEWP 294 G+ + GHG LVETQ+G+W++ L R G Y LGRET + V W E+ W Sbjct: 237 -STGQPELALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVNWTEDGWL 295 Query: 295 VVNPGKGVLELETPAPDLPETRWPELPARDEFTGSELGLIWNFLRTPRGEFW-SLTEKPG 353 + G E APDLPE + + P D+F +L WN LR P W SL E+PG Sbjct: 296 RIEDGGNHPLREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPG 355 Query: 354 FLRLHLKAERLSEIANPSFIGRRQQHLSFRAAADMTFRPAAEGEVAGLVLLQNADYH-FR 412 LRL E L+ + + S + RRQQ + ++P + +AGLV+ + + H + Sbjct: 356 HLRLR-GMESLTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGLVIYYDTEDHVYL 414 Query: 413 YEYGLEAGERVLQLIQRKGGS-EQLLAS-VPYPQDQ-VQLKVEARGQEYSFYYRSSEAAK 469 + E + LQ+IQ KGG+ ++LLAS +P +++ V LK + Y++ A+ Sbjct: 415 HVTWHEEKGKCLQIIQTKGGNYDELLASPIPLAEEKAVYLKGRIHRETMHLYFKQEGEAE 474 Query: 470 WTAFFERADGRVLSTDLAGG--FTGAYIGMYTSSQGAESESYADFDWFSYEGLE 521 W D +S D A FTG ++GM T ++ ADFD+F Y+ L+ Sbjct: 475 WQPVGPTIDVTHMSDDSAKQVRFTGTFVGMATQDLSG-TKKPADFDYFRYKELD 527 >CC0989 [G] COG3507 Beta-xylosidase Length = 546 Score = 322 bits (826), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 207/539 (38%), Positives = 289/539 (53%), Gaps = 32/539 (5%) Query: 4 FRNPVLPGFYPDPSAIRVGEDYYLVTSSFEFFPGVPIFHSKDLVNWRQLGHVLDRPSQLN 63 RNPVL GF PDPS +RVGEDYY+ TS+FE+FPGV I HS+DL NWR +G L RPSQLN Sbjct: 6 IRNPVLRGFNPDPSIVRVGEDYYIATSTFEWFPGVQIHHSRDLRNWRLIGRPLRRPSQLN 65 Query: 64 LDHTIPSMGIWAPTLRYHEGVFYMITTYVD-------------NDKNQHNFYVTATDPAG 110 + G+WAP L + +G F++I T V + ++ HN+ VT G Sbjct: 66 MMGDPDGCGVWAPCLTHADGRFWLIFTDVKRYGRTTVGGASGASLRDFHNYLVTCETIDG 125 Query: 111 DWSDPVWLEDAPGIDSSLFFDDDGKVYYTGNRVPPEGQDYPKHMDIWLQEIDLSQGRLIG 170 DWSDP+ L ++ G D SLF DDDG+ + N++ + I LQ +++ RL+G Sbjct: 126 DWSDPIHL-NSSGFDPSLFHDDDGRKWLV-NQLWDHRPGRNRFAGIVLQAFSVAEQRLVG 183 Query: 171 PKHSIWQGALKVAHAQEGPHIYKIGAWYYVLIAEGGTGHTHAITIARSKSVTGPYEGHKA 230 + I++G E PH+YK WYY+L AEGGTG HA T+ARS+++ GPYE H Sbjct: 184 ERKVIFEGT--AIGLTEAPHLYKRDGWYYLLTAEGGTGWGHAATLARSRAIDGPYELHPD 241 Query: 231 NPILTHRHLGRAYPIVNVGHGELVETQHGDWWMFCLASRTCGGYYRN-LGRETFLTPVIW 289 +LT R A P+ GHG+L ET G+ ++ L R G R LGRET + + W Sbjct: 242 TYLLTARDRPHA-PLQRAGHGDLFETADGETYIAYLCGRPLPGRGRCVLGRETAIQKLTW 300 Query: 290 -ENEWPVVNPGKGVLELETPAPDLPETRWPELPARDEFTGSELGLIWNFLRTPRGE-FWS 347 + WP G G LETP L + WP P R++F G+ L + + +LRTP E +S Sbjct: 301 GADGWPRTLDGSGDPTLETPGAGLVDQPWPTTPVREDFDGTTLPIDFQWLRTPYPETIFS 360 Query: 348 LTEKPGFLRLHLKAERLSEIANPSFIGRRQQHLSFRAAADMTFRPAAEGEVAGLVLLQNA 407 LT +PGFLRL+ + E L + + + RRQQ + AA + F PA + AGLV N Sbjct: 361 LTARPGFLRLYGR-ESLGSVFTQALVARRQQAHCYSAATRLDFEPAHFQQAAGLVCYYNG 419 Query: 408 D--YHFRYEYGLEAGE--RVLQLIQRKGGSEQLLASVPYPQDQVQLKVEARGQEYSFYYR 463 ++ + EAG+ RV+ ++ A +P V L+VE + F +R Sbjct: 420 SKLHYLHVTHDDEAGKHLRVMTCTPDSPQADSFTAPIPLGAGPVDLRVEVDFERLRFGFR 479 Query: 464 SSEAAKWTAFFERADGRVLSTDL----AGGFTGAYIGMYTSSQGAESESYADFDWFSYE 518 + W E D +LS + A FTGA++GM + + ADFDWF Y+ Sbjct: 480 QA-GGDWRWLPEVFDASILSDEATAPGAPNFTGAFVGMACQDMSGMATA-ADFDWFDYQ 536 >BS_xynB [G] COG3507 Beta-xylosidase Length = 533 Score = 288 bits (738), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 207/538 (38%), Positives = 279/538 (51%), Gaps = 36/538 (6%) Query: 6 NPVLPGFYPDPSAIRVGEDYYLVTSSFEFFPGVPIFHSKDLVNWRQLGHVLDRPSQLNLD 65 NPVL GF PDPS R GEDYY+ S+FE+FPGV I HSKDLVNW + H L R SQL++ Sbjct: 5 NPVLKGFNPDPSICRAGEDYYIAVSTFEWFPGVQIHHSKDLVNWHLVAHPLQRVSQLDMK 64 Query: 66 HTIPSMGIWAPTLRYHEGVFYMITT---YVDND-KNQHNFYVTATDPAGDWSDPVWLEDA 121 S G+WAP L Y +G F++I T VD K+ HN+ VT GDWS+P+ L ++ Sbjct: 65 GNPNSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKL-NS 123 Query: 122 PGIDSSLFFDDDGKVYYTGNRVPPEGQDYPKHMDIWLQEIDLSQGRLIGPKHSIWQGALK 181 G D+SLF D DGK Y N + D I +QE + +LIG I++G + Sbjct: 124 SGFDASLFHDTDGKKYLL-NMLWDHRIDRHSFGGIVIQEYSDKEQKLIGKPKVIFEGTDR 182 Query: 182 VAHAQEGPHIYKIGAWYYVLIAEGGTGHTHAITIARSKSVTGPYEGHKANPILTHRHLGR 241 E PH+Y IG +YY+L AEGGT + HA TIARS ++ GPYE H NPILT H Sbjct: 183 --KLTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPYEVHPDNPILTSWH-DP 239 Query: 242 AYPIVNVGHGELVETQHGDWWMFCLASRTC---------GGYYRNLGRETFLTPVIWENE 292 P+ GH +V+T +W++ L R Y LGRET + + W++E Sbjct: 240 GNPLQKCGHASIVQTHTDEWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLYWKDE 299 Query: 293 WPVVNPGK-GVLELETPAPDLPETRW-PELPARDEFTGSELGLIWNFLRTP-RGEFWSLT 349 WP V GK G LE++ AP +PET + P DEF S L + + LR P E SLT Sbjct: 300 WPYVVGGKEGSLEVD--APSIPETIFEATYPEVDEFEDSTLNINFQTLRIPFTNELGSLT 357 Query: 350 EKPGFLRLHLKAERLSEIANPSFIGRRQQHLSFRAAADMTFRPAAEGEVAGLVLLQNAD- 408 + P LRL E L+ +F+ RR Q L F A + F P + AGLV N + Sbjct: 358 QAPNHLRL-FGHESLTSTFTQAFVARRWQSLHFEAETAVEFYPENFQQAAGLVNYYNTEN 416 Query: 409 -YHFRYEYGLEAGERVLQL--IQRKGGSEQLLASVPYPQD--QVQLKVEARGQEYSFYYR 463 + + E G R+L+L S+ L + P++ V L+V +Y +Y+ Sbjct: 417 WTALQVTHDEELG-RILELTICDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKY-YYFY 474 Query: 464 SSEAAKWTAFFERADGRVLSTDL---AGGFTGAYIGMYTSSQGAESESYADFDWFSYE 518 S W + + LS D G FTGA++GM G + ADF +F Y+ Sbjct: 475 SFNKEDWHKIDIALESKKLSDDYIRGGGFFTGAFVGMQCQDTGG-NHIPADFRYFRYK 531 >CAC3452 [G] COG3507 Beta-xylosidase Length = 533 Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 198/542 (36%), Positives = 275/542 (50%), Gaps = 35/542 (6%) Query: 4 FRNPVLPGFYPDPSAIRVGEDYYLVTSSFEFFPGVPIFHSKDLVNWRQLGHVLDRPSQLN 63 +NP+L GF PDPS R DYY+ TS+FE+FPGV I HSKDLVNW + H L+R S L+ Sbjct: 2 IKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLD 61 Query: 64 LDHTIPSMGIWAPTLRYHEGVFYMITTYVDND----KNQHNFYVTATDPAGDWSDPVWLE 119 + S GIWAP L YH+G F++I T V K+ HN+ T G WSDP+ L Sbjct: 62 MKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITL- 120 Query: 120 DAPGIDSSLFFDDDGKVYYTGNRVPPEGQDYPKHMDIWLQEIDLSQGRLIGPKHSIWQGA 179 + G D+SLF D+DGK Y ++ I LQE + +LIG I++G Sbjct: 121 NGSGFDASLFHDNDGKKYLVNMYWDQRTYNH-NFYGIVLQEYSDKEKKLIGKAKIIYKGT 179 Query: 180 LKVAHAQEGPHIYKIGAWYYVLIAEGGTGHTHAITIARSKSVTGPYEGHKANPILTHRHL 239 EGPHIY IG +YY+ AEGGT + H+ T+ARSK++ GPYE P+LT H Sbjct: 180 --DIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHD 237 Query: 240 GRAYPIVNVGHGELVETQHGDWWMFCLASR--TCGGY-------YRNLGRETFLTPVIWE 290 R + GH LV T +W++ L R G Y LGRET + + W Sbjct: 238 PRN-SLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWV 296 Query: 291 NEWPVVNPGK-GVLELETPAPDLPETRWPEL-PARDEFTGSELGLIWNFLRTPRGE-FWS 347 + WP V GK G + +E AP +PE +W + +D F +L + + LR P E S Sbjct: 297 DNWPRVVGGKQGSVNVE--APKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIAS 354 Query: 348 LTEKPGFLRLHLKAERLSEIANPSFIGRRQQHLSFRAAADMTFRPAAEGEVAGLVLLQNA 407 L K G LRL+ K E L+ +FI RR Q F A+ ++F P + AGL N Sbjct: 355 LKAKKGNLRLYGK-ESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNT 413 Query: 408 D--YHFRYEYGLEAGERVLQLIQRKGGSEQLLAS--VPYPQD--QVQLKVEARGQEYSFY 461 + + + + G + + + L S +P P+D + LKVE R + Y + Sbjct: 414 ENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYS 473 Query: 462 YRSSEAAKWTAFFERADGRVLSTDLAGG---FTGAYIGMYTSSQGAESESYADFDWFSYE 518 Y S + W+ + R LS D G FTGA++G+ ++ ADFD+F Y+ Sbjct: 474 Y-SFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKP-ADFDYFCYK 531 Query: 519 GL 520 L Sbjct: 532 EL 533 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 45,259,116 Number of extensions: 2133611 Number of successful extensions: 2735 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 2685 Number of HSP's successfully gapped: 9 Length of query: 521 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 410 Effective length of database: 25,576,357 Effective search space: 10486306370 Effective search space used: 10486306370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)