BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0351.0013.p
         (300 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21349 [G] COG3717 5-keto 4-deoxyuronate isomerase                  299   4e-81
SMa0214 [G] COG3717 5-keto 4-deoxyuronate isomerase                   265   8e-71

>SMb21349 [G] COG3717 5-keto 4-deoxyuronate isomerase
          Length = 282

 Score =  299 bits (766), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/286 (51%), Positives = 192/286 (67%), Gaps = 4/286 (1%)

Query: 15  MFAKEIEYSMERRFASHPNEVKQFDTARLRKEFHIPVIFAPDELKLVLTHEDRMIVGGAN 74
           M A  I+Y++  R+A  P    + DT  LR  FHI  +F    + L  +H DRMIVGGA 
Sbjct: 1   MTASHIDYTI--RYAVDPAAAARMDTDALRANFHIGDLFRQGRISLTYSHYDRMIVGGAM 58

Query: 75  PVNKDVALTTDLKELGVTYFLERRELGVINVGGKGSVVVDGTEYEIDFKECLYVGQGAKD 134
           PV+K +AL T ++  G   FLERREL  +N+GG G + ++G  + ++ ++  Y G G +D
Sbjct: 59  PVDKPLALET-IRPTGTARFLERRELIAVNIGGPGRIEMNGESFRLEPRDMAYAGMG-ED 116

Query: 135 VIFKSADSAKPAKFYLNSAPAHQSYPTTKTTLAESESGAMGGLENSNERTIHRFIHAGGV 194
           V F S D A PAKFYL SAPAHQ+ P     + +++   +G    SNER+I +FIH  GV
Sbjct: 117 VTFSSEDPAVPAKFYLLSAPAHQALPRRHIRIGDAKRLDLGSAATSNERSIFQFIHPEGV 176

Query: 195 QSAQLVMGMTQLKPGSMWNTMPSHTHPRRMEAYFYFDLPDDSIVFHLMGEPTETRHIVMH 254
           ++ QLV+GMTQL PGS+WNTMP H H RRMEAY YFDL D + V HLMGEP+ETRHIVM 
Sbjct: 177 KTCQLVVGMTQLAPGSVWNTMPCHVHDRRMEAYLYFDLDDSARVLHLMGEPSETRHIVMA 236

Query: 255 NEQAVISPSWSIHSGVGTHNYTFIWSMAGDNKRYDDMDPVGMKELQ 300
            E+AV+SP WSIHSG GT NY FIW+MAGDN  Y D++ V M+ L+
Sbjct: 237 REEAVLSPPWSIHSGCGTANYAFIWAMAGDNIDYTDVEMVPMETLR 282


>SMa0214 [G] COG3717 5-keto 4-deoxyuronate isomerase
          Length = 296

 Score =  265 bits (676), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 128/284 (45%), Positives = 176/284 (61%), Gaps = 1/284 (0%)

Query: 17  AKEIEYSMERRFASHPNEVKQFDTARLRKEFHIPVIFAPDELKLVLTHEDRMIVGGANPV 76
           A  +  S+  R    P +  + +T  LR  F I  +F P    L  +H DRMIVGG  P 
Sbjct: 14  ADAVTISVSVRQVVGPEDAARRNTQGLRDGFVIEALFQPGRANLTYSHLDRMIVGGVVPA 73

Query: 77  NKDVALTTDLKELGVTYFLERRELGVINVGGKGSVVVDGTEYEIDFKECLYVGQGAKDVI 136
             D  +   + E G   FL+RRE  +IN+GG G+V V   ++ + F+E LYVG G   + 
Sbjct: 74  -ADRLVIDRVAETGTQRFLDRREAAIINIGGSGTVSVGDKDHVLGFQEALYVGMGGGALG 132

Query: 137 FKSADSAKPAKFYLNSAPAHQSYPTTKTTLAESESGAMGGLENSNERTIHRFIHAGGVQS 196
           F S D+  PA FY+ SAPAH+S PT   T   ++  ++G  E SN RTI++++H    +S
Sbjct: 133 FASDDANAPALFYVLSAPAHRSCPTVHITRDMAKKLSLGSAEESNARTINQYVHPDVCES 192

Query: 197 AQLVMGMTQLKPGSMWNTMPSHTHPRRMEAYFYFDLPDDSIVFHLMGEPTETRHIVMHNE 256
            QL++G+T  +PGS+WNTMP+H H RRME Y YF + + + +FH MGEP ETRH+V+ N 
Sbjct: 193 CQLLVGLTMFEPGSVWNTMPAHVHDRRMEVYLYFGMQEATRIFHFMGEPGETRHVVLKNH 252

Query: 257 QAVISPSWSIHSGVGTHNYTFIWSMAGDNKRYDDMDPVGMKELQ 300
           +AV+SP WSIHSG GT  Y FIW+MAGDN  + DMD V M+ L+
Sbjct: 253 EAVLSPGWSIHSGAGTGRYAFIWAMAGDNMSFTDMDKVPMEALR 296


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 23,650,584
Number of extensions: 942827
Number of successful extensions: 1385
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 194
Effective length of database: 26,153,027
Effective search space: 5073687238
Effective search space used: 5073687238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)