BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0351.0008.p
         (75 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3324 [K] COG1476 Predicted transcriptional regulators               98   3e-21
DR2454 [K] COG1476 Predicted transcriptional regulators                68   3e-12
AF1793 [K] COG1476 Predicted transcriptional regulators                65   3e-11
AF1627 [K] COG1476 Predicted transcriptional regulators                63   8e-11
CAC2495 [K] COG1476 Predicted transcriptional regulators               62   1e-10

>CAC3324 [K] COG1476 Predicted transcriptional regulators
          Length = 69

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 59/67 (88%)

Query: 3  VKTRIRELRKERRISQEELAKALRVTRHTITSIENEKYTASLPLAYKISRFFGLPIEDIF 62
          +KTRI+ELRK+ ++SQEELA A+ VTR TITS+E EKYTASL LAYKI+ +FGL IE+IF
Sbjct: 1  MKTRIQELRKQHKLSQEELALAVGVTRQTITSLEREKYTASLVLAYKIAHYFGLTIEEIF 60

Query: 63 DFSDVED 69
          DFS++E+
Sbjct: 61 DFSEIEE 67


>DR2454 [K] COG1476 Predicted transcriptional regulators
          Length = 64

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 3  VKTRIRELRKERRISQEELAKALRVTRHTITSIENEKYTASLPLAYKISRFFGLPIEDIF 62
          +K RI+ LR E  ++Q +LA  L V+R TI ++E  KY  SLPLA+K++R FGL IEDIF
Sbjct: 1  MKNRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIF 60


>AF1793 [K] COG1476 Predicted transcriptional regulators
          Length = 70

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query: 3  VKTRIRELRKERRISQEELAKALRVTRHTITSIENEKYTASLPLAYKISRFFGLPIEDIF 62
          ++TRIRE R +  ++QEELAK + V R TI  +E  KY  SL LAYKI+R F   IED+F
Sbjct: 1  MRTRIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLF 60

Query: 63 DFSDVE 68
           F D E
Sbjct: 61 IFDDEE 66


>AF1627 [K] COG1476 Predicted transcriptional regulators
          Length = 71

 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query: 3  VKTRIRELRKERRISQEELAKALRVTRHTITSIENEKYTASLPLAYKISRFFGLPIEDIF 62
          ++TRI+E R +  ++QEELAK + V R TI  +E  KY  SL LAYKI+R F   IEDIF
Sbjct: 1  MRTRIKEFRAKFNMTQEELAKRVGVRRETIVFLEKGKYNPSLKLAYKIARVFNAKIEDIF 60

Query: 63 DFSDVE 68
           F + E
Sbjct: 61 IFDEEE 66


>CAC2495 [K] COG1476 Predicted transcriptional regulators
          Length = 64

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 48/64 (75%)

Query: 3  VKTRIRELRKERRISQEELAKALRVTRHTITSIENEKYTASLPLAYKISRFFGLPIEDIF 62
          +K  IR+LR++  ++Q+ELA+ + V+R TI S+ENE+Y  S+ LA+KI++ F L IE++F
Sbjct: 1  MKNNIRKLREQFGLTQQELAERVSVSRQTIISLENERYNPSIFLAHKIAKSFELTIENVF 60

Query: 63 DFSD 66
           F D
Sbjct: 61 IFED 64


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.140    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,015,166
Number of extensions: 147450
Number of successful extensions: 569
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 17
Length of query: 75
Length of database: 38,378,431
Length adjustment: 46
Effective length of query: 29
Effective length of database: 33,073,067
Effective search space: 959118943
Effective search space used: 959118943
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)