BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0351.0002.p
         (104 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins    70   1e-12
SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot...    67   5e-12
BMEII0648 [K] COG2207 AraC-type DNA-binding domain-containing pr...    67   6e-12
CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot...    67   7e-12
AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing prot...    65   3e-11

>BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 261

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 1   LQKAVSLINEHFTEPLLVSNLAAAVGYSVQHFQRLFLQEYGITPHRYLQNLRLERALQLI 60
           +  A+S I+ H  EPL +S++A+ VGYS  HF RLF ++ G++P  Y+ +LRL++A +L+
Sbjct: 8   MDVAISYIHNHLYEPLSLSHIASYVGYSSYHFSRLFKEKTGLSPLYYVSSLRLQKAKELL 67

Query: 61  RENADIPVQEIALNLGMET-NYFIRVFRNTYGCTPGTMRKRLHE 103
             N ++ V++I L +G ++   F   F    G +P   R+ +++
Sbjct: 68  L-NTNLTVRDIGLEIGQQSLGTFTTRFTKCVGMSPSHFRESMNQ 110


>SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 333

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 1   LQKAVSLINEHFTEPLLVSNLAAAVGYSVQHFQRLFLQEYGITPHRYLQNLRLERALQLI 60
           L++AV+ + EH  EP  ++ LA  VG S  HF RLF +  G++P RY    R+ RA QL+
Sbjct: 234 LRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARA-QLL 292

Query: 61  RENADIPVQEIALNLGMET-NYFIRVFRNTYGCTPGTMRK 99
            +  D  + EI +++G  + ++F +VFR   G  P   R+
Sbjct: 293 LQETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRR 332


>BMEII0648 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 135

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 8   INEHFTEPLLVSNLAAAVGYSVQHFQRLFLQEYGITPHRYLQNLRLERALQLIRENADIP 67
           + E+F  P+ V ++AA +G S  HF   F + +G TPHRYL  LRL+ A + +RE  D+P
Sbjct: 36  LQENFRGPVSVPDMAAMLGISAGHFATCFRESFGQTPHRYLLKLRLDEAERCLRET-DMP 94

Query: 68  VQEIALNLGMET-NYFIRVFRNTYGCTPGTMRK 99
           + EIA  L   + ++     R     TPG +R+
Sbjct: 95  ISEIAARLNFSSQSHLTTALRKYRRLTPGKIRQ 127


>CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 295

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 1   LQKAVSLINEHFTEPLLVSNLAAAVGYSVQHFQRLFLQEYGITPHRYLQNLRLERALQLI 60
            Q    LI E +TE L ++ LA  V +S  HF R F Q  G T   Y+  +RL ++   +
Sbjct: 187 FQCVFRLIEEKYTEKLTLNELADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYL 246

Query: 61  RENADIPVQEIALNLGME-TNYFIRVFRNTYGCTPGTMRK 99
           ++  D+ + EIA+  G +  NYF R+F+  Y  TP   RK
Sbjct: 247 KQ-TDLNITEIAIKCGFDNNNYFSRLFKKHYDMTPTKYRK 285


>AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 218

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 0/86 (0%), Positives = 0/86 (0%), Gaps = 2/86 (2%)

Query: 15  PLLVSNLAAAVGYSVQHFQRLFLQEYGITPHRYLQNLRLERALQLIRENADIPVQEIALN 74
            L      A         +R  +Q +      Y   L L     L +             
Sbjct: 163 HLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLPLLPLLSKLRD-          221

Query: 75  LGM-ETNYFIRVFRNTYGCTPGTMRK 99
                                     
Sbjct: 222                            247


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,182,638
Number of extensions: 221426
Number of successful extensions: 1596
Number of sequences better than 1.0e-05: 787
Number of HSP's gapped: 1607
Number of HSP's successfully gapped: 787
Length of query: 104
Length of database: 38,378,431
Length adjustment: 72
Effective length of query: 32
Effective length of database: 30,074,383
Effective search space: 962380256
Effective search space used: 962380256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)