BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0056.p (248 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0999 [O] COG0785 Cytochrome c biogenesis protein 110 3e-24 FN0804 [O] COG0785 Cytochrome c biogenesis protein 108 8e-24 SMc00248 [O] COG0785 Cytochrome c biogenesis protein 107 1e-23 Cgl0435 [O] COG0785 Cytochrome c biogenesis protein 96 4e-20 SP0658 [O] COG0785 Cytochrome c biogenesis protein 96 6e-20 >SP0999 [O] COG0785 Cytochrome c biogenesis protein Length = 235 Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 18/186 (9%) Query: 20 AFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGST----TRKARFRTISHTLAFILG 75 F AGV SF SPC PL P Y G+ + + ++ + RK + + TL FI G Sbjct: 10 VFLAGVLSFFSPCIFPLLPVY----AGILLDDQESAKSFSLFGRKVLWSGLIRTLCFIAG 65 Query: 76 LSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKLNLKW 135 +S +F+ +GFGAG FG + + R +++ +GL + IF K L ++ K Sbjct: 66 ISLIFFILGFGAGYFGHILYA--NWFRYGMGAIIIILGLHQMEIFHLKKLEVQKSFTFKK 123 Query: 136 KPAG-YLGSFILGIGFSAGWSPCIGPILTPIIALSASD-----QGAWFTLITAYCIGFAL 189 + Y +F+LGI FS GW+PCIGP+L+ ++AL+AS QGA +TLI Y +G AL Sbjct: 124 SDSNRYWSAFLLGITFSFGWTPCIGPVLSSVLALAASGGNGAWQGAIYTLI--YTLGMAL 181 Query: 190 PFIVLA 195 PF+VLA Sbjct: 182 PFLVLA 187 >FN0804 [O] COG0785 Cytochrome c biogenesis protein Length = 218 Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 18/178 (10%) Query: 20 AFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFRTISHTLAFILGLSAV 79 A+ AGVASF SPC P+ P Y+S ++ +++S TLAF+LGLS Sbjct: 11 AYLAGVASFFSPCIFPIIPVYISILSN--------------GEKKSLSKTLAFVLGLSVT 56 Query: 80 FYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKLNLKWKPAG 139 + +GFGAG+ G++F +R + I+V+ +GLF + I + KFL + + +N + + Sbjct: 57 YIVLGFGAGVIGDLFLNNN--VRIIGGIIVVILGLFQMEILKLKFLEKTKIMNYEAENQS 114 Query: 140 YLGSFILGIGFSAGWSPCIGPILTPIIALSAS--DQGAWFTLITAYCIGFALPFIVLA 195 +F+LG+ FS GW+PC+GPIL I+ L++S D L+ Y +G A PF++ + Sbjct: 115 IFSTFLLGLTFSLGWTPCVGPILASILILASSSGDTTNSVMLMFIYLLGMATPFVIFS 172 >SMc00248 [O] COG0785 Cytochrome c biogenesis protein Length = 247 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 13/243 (5%) Query: 11 TLSNLNAGIAFAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFR--TISH 68 ++++++ A AG SF+SPC LPL P YL Y+ G+SV + + G+ A R + Sbjct: 2 SIADISIWTAVLAGALSFLSPCVLPLVPPYLCYMAGVSVDQFRDGNAVATASTRRAVLPA 61 Query: 69 TLAFILGLSAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRE 128 L F LG + VF +G GA G + ++ DL+ ++ I+++ MGL LG+F+ L RE Sbjct: 62 ALFFTLGFATVFVALGAGASSIGLLLRQHLDLLSRIGGIIIIIMGLHFLGVFRIGLLARE 121 Query: 129 RKLNLKWKPAGYLGSFILGIGFSAGWSPCIGPILTPIIALSASD----QGAWFTLITAYC 184 + KPA G++++G+ F+ GW+PCIGP+L I+ ++A+ GA L+ Y Sbjct: 122 ARFQ-GGKPATLSGAYVMGLAFAFGWTPCIGPVLGTILGVAAARDTVADGA--ALLAIYS 178 Query: 185 IGFALPFIVLAFFLGGARRIL----KYSNLLMKVXXXXXXXXXXXXXTDQMFRITIWLQG 240 +G A+PF + A F R L ++ L+ K+ + + IW Q Sbjct: 179 LGLAVPFWIAAGFSSAFMRFLSRFRRHLGLIEKLMGALLVAAGLAFLFGFVSSVAIWFQQ 238 Query: 241 ITP 243 P Sbjct: 239 TFP 241 >Cgl0435 [O] COG0785 Cytochrome c biogenesis protein Length = 268 Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 18/202 (8%) Query: 23 AGVASFISPCCLPLYPSYLSYITGLSVQELK---AGSTTRKARFRTISHTLAFILGLSAV 79 AG+ SF SPC +PL P Y+SY+ G+ E++ G+ + RF + FILG + V Sbjct: 33 AGLVSFASPCVVPLVPGYISYLAGVVGGEVEYSAQGTKVKTKRFAVGGAAMLFILGFTVV 92 Query: 80 FYTIGFGAGLFG--EVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKLNLKWKP 137 F +FG V D + ++ ++ + MG+ +G F P R +W Sbjct: 93 FVLAT--VSVFGAISVLTLNADTLMRIGGVVTIIMGIVFMG-FIPGLQRDTRMAPKRWTT 149 Query: 138 AGYLGSFILGIGFSAGWSPCIGPILTPIIALSASDQGA----WFTLITAYCIGFALPFIV 193 +LG+ +LG F+ GW+PC+GP L II++SA +G LI YC+G LPF++ Sbjct: 150 --WLGAPLLGGVFALGWTPCLGPTLAAIISISAGTEGMTAARGVILIVGYCLGLGLPFLL 207 Query: 194 LAF----FLGGARRILKYSNLL 211 +A L G + K+S L Sbjct: 208 IALGSSKALTGVEWLRKHSRTL 229 >SP0658 [O] COG0785 Cytochrome c biogenesis protein Length = 236 Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 15/164 (9%) Query: 21 FAAGVASFISPCCLPLYPSYLSYITGLSVQELKAGSTTRKARFR----TISHTLAFILGL 76 F AG+ SF SPC LPL P Y TG+ + + K G+ +F ++ TLAFI G+ Sbjct: 11 FLAGILSFFSPCILPLLPVY----TGVLLDD-KDGAQASSGKFSISVTSLLRTLAFIAGI 65 Query: 77 SAVFYTIGFGAGLFGEVFQEQRDLIRKLSAILVMAMGLFLLGIFQPKFLLRERKLNLKWK 136 S +F +G+GAG G++ + L+ +++ +GL + I K L +E++L L+ + Sbjct: 66 SFIFILLGYGAGFLGDLLYA--SWFQYLTGAIIILLGLHQMEILHFKGLYKEKRLQLQGQ 123 Query: 137 PA---GYLGSFILGIGFSAGWSPCIGPILTPIIALSAS-DQGAW 176 GY +F+LG+ FS W+PC+GP+L ++AL+AS GAW Sbjct: 124 GQNGKGYSQAFLLGLTFSFAWTPCVGPVLGSVLALAASGGSGAW 167 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,491,849 Number of extensions: 640351 Number of successful extensions: 1635 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 1604 Number of HSP's successfully gapped: 18 Length of query: 248 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 144 Effective length of database: 26,383,695 Effective search space: 3799252080 Effective search space used: 3799252080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)