BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0054.p (255 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1485 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 201 8e-52 BH1394 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase comp... 191 7e-49 slr2044 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 162 4e-40 TP0164 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase comp... 159 5e-39 BS_ytgB [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 156 4e-38 >lin1485 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 257 Score = 201 bits (512), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 141/205 (68%), Gaps = 1/205 (0%) Query: 18 IIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIKL 77 IIE+ ++S+ Y ++ + ++ + V++ F G+IG NG+GK+T+LK+I+G+L G I L Sbjct: 4 IIEVNNVSYHYDKEHALENIHFQVEKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSIAL 63 Query: 78 FGQSVKKFKDWERIGYVPQK-NAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCDD 136 FG+ FKDW +IG+V QK NAFN FPATV+EVV SGL K L + ++ ++ D Sbjct: 64 FGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNQDKEAIDY 123 Query: 137 ALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFELI 196 AL+ + + D + +G+LSGGQQQRVF+ARAL++ P+LLILDEPTVG+D E F+EL+ Sbjct: 124 ALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYELL 183 Query: 197 MHMHAHHHMTFLMVSHDIDMIKNYL 221 ++ MT L+V+HD+ + Y+ Sbjct: 184 AELNRTEEMTLLLVTHDLVAVNTYV 208 >BH1394 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 259 Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 142/204 (69%), Gaps = 1/204 (0%) Query: 19 IEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIKLF 78 I+I+++++ Y + V+ +++ +++ F+G++G NG+GK+TL+K I+GL + G IKLF Sbjct: 10 IDIRNVAYRYDYRNVLENVTLPIRQGAFVGLVGPNGSGKSTLIKCILGLQKPSQGSIKLF 69 Query: 79 GQSVKKFKDWERIGYVPQK-NAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCDDA 137 GQ V KF+ W+RIGYV QK N+FN FPATV EVV GL+ + R ++K +QK +A Sbjct: 70 GQPVDKFRQWDRIGYVSQKANSFNSGFPATVYEVVSMGLFGKVGMFRFLTKKHKQKVKEA 129 Query: 138 LEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFELIM 197 + + + + +G+LSGGQQQRVF+ARAL++ P+LLILDEPTVG+D + F+ L+ Sbjct: 130 VASVGMSGYLHQNIGELSGGQQQRVFIARALVSDPELLILDEPTVGVDVSSVKSFYTLLS 189 Query: 198 HMHAHHHMTFLMVSHDIDMIKNYL 221 ++ +T L+V+HDI + +Y+ Sbjct: 190 ELNQKRGITLLLVTHDIGAMTDYV 213 >slr2044 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 289 Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 130/206 (63%), Gaps = 4/206 (1%) Query: 16 QHIIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEI 75 Q +I +++L YG V+ +++ V+ERDFLG+IG NG GKTTLLK+++GL+ G + Sbjct: 20 QPVIAVENLFAGYGATPVLENINLRVEERDFLGLIGPNGGGKTTLLKVLLGLIQPQQGTV 79 Query: 76 KLFGQSVKKFKDWERIGYVPQKNAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCD 135 ++ G+SV++ + + +GYVPQ F+ FP V +VV G L RR + + Sbjct: 80 QILGRSVEQGRRY--VGYVPQWLEFDRAFPVRVLDVVRMGRLGRGKLFRRYHQQDEAIVR 137 Query: 136 DALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFEL 195 LE + + D+ D+ +G LSGGQ+QRV++ARAL + P +L+LDEPT +D++ Q +EL Sbjct: 138 RCLEQVGMGDLGDRPLGTLSGGQRQRVYIARALASQPQILLLDEPTANVDSKVQRSIYEL 197 Query: 196 IMHMHAHHHMTFLMVSHDIDMIKNYL 221 + + + MT +M+SHD+ I Y+ Sbjct: 198 LGEL--NQTMTIVMISHDLGAISRYV 221 >TP0164 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 266 Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 126/210 (60%), Gaps = 3/210 (1%) Query: 12 LDCHQHIIEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPAT 71 + + +++ DL+ +Y ++ V+ D+ + E IIG NGAGK+TLLK I+GLLP Sbjct: 4 ISATAYAVQVDDLTLAYRQKPVLWDVDVRIPEGVIEAIIGPNGAGKSTLLKAIMGLLPLA 63 Query: 72 SGEIKLFGQSVKKFKDWERIGYVPQKNAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQ 131 SGE+++FG+ K + R+ YVPQ++A + FP TV +VV+ G Y + I R K ++ Sbjct: 64 SGEVRVFGRPFSKER--RRVAYVPQRSAVDWDFPTTVFDVVLMGSYGSLGWILRPGKREK 121 Query: 132 QKCDDALEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAG 191 + +A+E + + D+++ +LSGGQQQRVFLARAL+ DL +DEP G+DA T+ Sbjct: 122 ARAREAIEEVGMGAFLDRQISELSGGQQQRVFLARALVQDADLYFMDEPFQGVDAATEQA 181 Query: 192 FFELIMHMHAHHHMTFLMVSHDIDMIKNYL 221 L+ + T L+V HD+ + Y Sbjct: 182 IVTLLKTLKGRGK-TLLVVHHDLQTVAEYF 210 >BS_ytgB [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 250 Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 19 IEIQDLSFSYGEQKVITDLSYTVKERDFLGIIGSNGAGKTTLLKMIVGLLPATSGEIKLF 78 +E+ +++ +Y ++ V+ D+S V E +GIIG NGAGK+TL+K I+GL+P SG+I ++ Sbjct: 4 VELDNVTVAYHKKPVLQDISLQVPEGKLIGIIGPNGAGKSTLIKTILGLVPRASGDISIY 63 Query: 79 GQSVKKFKDWE-RIGYVPQKNAFNPLFPATVREVVMSGLYNNKNLIRRVSKAQQQKCDDA 137 G K +KD RIGYVPQ+ + + FP + +VV+ G Y L++R KA + A Sbjct: 64 G---KDYKDQRTRIGYVPQRGSVDWDFPTSPLDVVLMGRYGRIGLLKRPKKADVEMAKAA 120 Query: 138 LEVMRIQDIADKRVGQLSGGQQQRVFLARALINHPDLLILDEPTVGIDAETQAGFFELIM 197 L + + D A +++ QLSGGQQQRVFLARAL + D+ +DEP G+DA T+ L+ Sbjct: 121 LTKVGMHDYAKRQISQLSGGQQQRVFLARALCQNADIYFMDEPFAGVDAATERAIMTLLA 180 Query: 198 HMHAHHHMTFLMVSHDIDMIKNYL 221 + T L+V HD+ ++Y Sbjct: 181 ELK-EKGKTVLVVHHDLQTAEDYF 203 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,013,117 Number of extensions: 766791 Number of successful extensions: 18184 Number of sequences better than 1.0e-05: 2192 Number of HSP's gapped: 15871 Number of HSP's successfully gapped: 2486 Length of query: 255 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 151 Effective length of database: 26,383,695 Effective search space: 3983937945 Effective search space used: 3983937945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)