BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0052.p
         (84 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0053_2 [R] COG0073 EMAP domain                                      114   3e-26
BS_metS_2 [R] COG0073 EMAP domain                                      97   9e-21
SA0448_2 [R] COG0073 EMAP domain                                       92   3e-19
lin0216_2 [R] COG0073 EMAP domain                                      84   5e-17
CAC2991_2 [R] COG0073 EMAP domain                                      83   9e-17

>BH0053_2 [R] COG0073 EMAP domain
          Length = 105

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 64/70 (91%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           GYE+RQVVSGIAK+Y+P +L+G+KVIC+ NLKPVKLRGELSQGMILA S+GDQL +ATV 
Sbjct: 36  GYEKRQVVSGIAKYYSPSDLIGKKVICVTNLKPVKLRGELSQGMILAGSEGDQLRLATVD 95

Query: 75  DSMPNGAIVK 84
            ++PNG++VK
Sbjct: 96  GALPNGSLVK 105


>BS_metS_2 [R] COG0073 EMAP domain
          Length = 125

 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 55/70 (78%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVP 74
           G+E+RQVVSGIAK YTPEELVG+K++C+ NLKPVKLRGELSQGMILA      L + ++ 
Sbjct: 56  GFEKRQVVSGIAKHYTPEELVGKKLVCVTNLKPVKLRGELSQGMILAGEADGVLKVVSID 115

Query: 75  DSMPNGAIVK 84
            S+P G  +K
Sbjct: 116 QSLPKGTRIK 125


>SA0448_2 [R] COG0073 EMAP domain
          Length = 105

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 56/68 (82%)

Query: 17  EQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVPDS 76
           EQRQ+VSGIAKFYTP++++G+KV  + NLKP KL G+ S+GMIL+A K   LT+ ++P +
Sbjct: 38  EQRQIVSGIAKFYTPDDIIGKKVAVVTNLKPAKLMGQKSEGMILSAEKDGVLTLVSLPSA 97

Query: 77  MPNGAIVK 84
           +PNGA++K
Sbjct: 98  IPNGAVIK 105


>lin0216_2 [R] COG0073 EMAP domain
          Length = 115

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 52/66 (78%)

Query: 19  RQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIATVPDSMP 78
           RQV+SGIA+FY PEEL+G+KVI + NLKPVKLRG +S+GMIL+  K  +L++     ++P
Sbjct: 50  RQVLSGIAEFYQPEELIGKKVIVVSNLKPVKLRGLMSEGMILSGEKDGKLSVIEANSALP 109

Query: 79  NGAIVK 84
           NGA VK
Sbjct: 110 NGAKVK 115


>CAC2991_2 [R] COG0073 EMAP domain
          Length = 108

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 15  GYEQRQVVSGIAKFYTPEELVGRKVICIVNLKPVKLRGELSQGMILAASKGDQLTIAT-- 72
           G E+RQV+SGI++FY PE+L+G+KV+ + NLKP KL G+LSQGMILA +  D   + T  
Sbjct: 37  GGEERQVLSGISQFYKPEDLIGKKVVLVANLKPAKLMGQLSQGMILAVATDDDSKLYTLD 96

Query: 73  VPDSMPNGAIVK 84
           +P+ +P G+IV+
Sbjct: 97  IPEDIPTGSIVR 108


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,791,897
Number of extensions: 128233
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 36
Length of query: 84
Length of database: 38,378,431
Length adjustment: 54
Effective length of query: 30
Effective length of database: 32,150,395
Effective search space: 964511850
Effective search space used: 964511850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)