BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0045.p (471 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2110 [T] COG2972 Predicted signal transduction protein with a ... 179 8e-45 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 155 1e-37 BH1909 [T] COG2972 Predicted signal transduction protein with a ... 151 2e-36 lin2119 [T] COG2972 Predicted signal transduction protein with a... 144 4e-34 BH0792 [T] COG2972 Predicted signal transduction protein with a ... 139 1e-32 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 179 bits (454), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 163/297 (54%), Gaps = 9/297 (3%) Query: 180 LFGMNALMGVLLAVWASRSITGPVGRLVGLAKRIATGNLDIGPQPSRDDELGILSNAIQQ 239 L +N L LL V S+SI + R++ KR+ DI P DE+G L+N + Sbjct: 289 LASINLLFPTLLIVLISKSIHSRLLRVLKHMKRMKKQKFDIINFPGDKDEIGELTNEFNK 348 Query: 240 MSADLSVLIER------DKKSLEMQRLVKELELQALQSQINPHFLFNTLNVLSRLALLEG 293 MS ++ LI +KK L+++ K+ +L ALQSQINPHFLFN L + ++++G Sbjct: 349 MSQTINRLINEVYASNIEKKDLQLRE--KQAQLSALQSQINPHFLFNALETIRMRSMIKG 406 Query: 294 ADRTSDLIVSMSNLLRYSLQKLDKPVTLQDEIAHIQEYAAIQQARFRERIRFEMDFDPSV 353 T+ +I +M+ + R SL VT++DE+ I + IQ+ RF +++ +E+D D Sbjct: 407 EKETAKIIQNMAKIFRNSLTWGKDWVTVRDELCLIICFLEIQKYRFGDKMEYELDIDEEA 466 Query: 354 LQEEIPALTLQPIVENAFLHGVANMESGAVISLVLRRTGGEVWIEISDNGVGMPEETLQS 413 IP + P VENA +HG+ +++ +I + + + GE+ EISDNG GM EE L S Sbjct: 467 YDYIIPNMVFLPFVENASIHGIESVKEKGIIQIRVEKNDGEIVYEISDNGAGMDEEKLAS 526 Query: 414 ILRLEAGAESGKSTGLGTRNVLKRLQLFFGEEDLVRIHSRLGQGTTITIRIPAGKGG 470 ++ E +G +NV RL+L + I+SR GQGTT+ I++PA K Sbjct: 527 LIET-LKNEENMGENVGIKNVYYRLKLHYKNHFDFSINSRPGQGTTVQIKLPAEKNN 582 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 148/276 (53%), Gaps = 19/276 (6%) Query: 196 SRSITGPVGRLVGLAKRIATGNLDIG-----PQPSRDDELGILSNAIQQMSADLSVLIER 250 + SIT P+ +LV K + ++ G P+ ++D E G+L+ M ++ L+E Sbjct: 311 ANSITEPIEQLVTAMKSVQHSGIEAGVSLSLPEHTQD-EAGMLNRHFTVMMKRINELME- 368 Query: 251 DKKSLEMQRLVKELELQALQSQINPHFLFNTLNVLSRLALLEGADRTSDLIVSMSNLLRY 310 +++E Q ++KE EL+ALQ+QINPHFL+NTL ++ LA + S ++ S+ LLR Sbjct: 369 --ENVEKQLIIKETELKALQAQINPHFLYNTLESINWLAKANQQKQISKMVESLGFLLRN 426 Query: 311 SLQKLDKPVTLQDEIAHIQEYAAIQQARFRERIRFEMDFDPSVLQEEIPALTLQPIVENA 370 S+ VT+Q+E ++ Y IQ+ RF ER++F +D D V IP LTLQP+ ENA Sbjct: 427 SIHMKKDIVTIQEEADIVRHYMTIQRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENA 486 Query: 371 FLHGVANMESGAVISLVLRRTGGEVWIEISDNGVGMPEETLQSILRLEAGAESGKSTGLG 430 + + I + ++ G V I + DNG GM L ES G+G Sbjct: 487 IQYALEPFTRPCAIRIQAKKAKGCVCITVEDNGPGMDGRIL----------ESTGGRGIG 536 Query: 431 TRNVLKRLQLFFGEEDLVRIHSRLGQGTTITIRIPA 466 N+ +R+ L FGE +RIHS +GT I I IP Sbjct: 537 LWNIRERISLTFGEPYGLRIHSEHEKGTRIVITIPC 572 >BH1909 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/312 (30%), Positives = 167/312 (53%), Gaps = 4/312 (1%) Query: 164 QNIREENDRMNRLGAALFGMNALMGVLLAVWASRSITGPVGRLVGLAKRIATGNLDIGPQ 223 ++I ++ R++ +GA + + VLL V S I+ + L ++A+G+L Sbjct: 284 EHIMKDAKRLSIMGATVTMGGMAVAVLLIVHFSWLISKRLSHLSERINQVASGDLKTKIV 343 Query: 224 PSRDDELGILSNAIQQMSADLSVLIERDKKSLEMQRLVK----ELELQALQSQINPHFLF 279 DE+G LS QM A+L LI + ++ +RL++ E++L+ L SQINPHFLF Sbjct: 344 VDGKDEIGQLSVQFNQMVANLRSLIHQVHETNRQKRLLEKSQNEIKLKMLASQINPHFLF 403 Query: 280 NTLNVLSRLALLEGADRTSDLIVSMSNLLRYSLQKLDKPVTLQDEIAHIQEYAAIQQARF 339 NTL + + ++G + ++ + L+R SL+ + L++E+ ++ Y IQ R+ Sbjct: 404 NTLESIRMKSHMKGETEIAKVVKQLGKLMRKSLEVTGHHIPLRNELDMVRCYLEIQTFRY 463 Query: 340 RERIRFEMDFDPSVLQEEIPALTLQPIVENAFLHGVANMESGAVISLVLRRTGGEVWIEI 399 +R+ +E+ DP EI L +QP+VENA +HG+ E G +++ G ++ + + Sbjct: 464 GDRLHYELYIDPQSEMVEILPLIIQPLVENAVIHGLERTEDGGTVTISTIVNGNDLTVIV 523 Query: 400 SDNGVGMPEETLQSILRLEAGAESGKSTGLGTRNVLKRLQLFFGEEDLVRIHSRLGQGTT 459 +D+G GM EE L++I + + +G NV KRLQL +G+ + I S G+GT Sbjct: 524 NDDGCGMDEEKLEAIQNMLHHPQEVDGNKIGLLNVHKRLQLTYGKTSGLIIESAKGKGTC 583 Query: 460 ITIRIPAGKGGE 471 + I +G + Sbjct: 584 VRFTISQIRGDD 595 >lin2119 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 159/302 (52%), Gaps = 21/302 (6%) Query: 179 ALFGMNALMGVLLAVWA-------SRSITGPVGRLVGLAKRIATGNLDIG-PQPSRDDEL 230 LFG+ G+LL +++ SR + + ++G R+ G LD P + DEL Sbjct: 287 TLFGI----GLLLVIFSISVNFVISRRYSKRILTIIGGMNRVENGTLDAKLPVDNNGDEL 342 Query: 231 GILSNAIQQMSADLSVLIERDKKSLEMQRLVKELELQALQSQINPHFLFNTLNVLSRLAL 290 ++S M+ +L +++ SLEM+ ++ L+ALQ Q+ PHFL+N+L + A Sbjct: 343 TMISERFNHMTENLDAYVKK-VYSLEMEE--QKARLKALQGQMQPHFLYNSLEAIRMNAR 399 Query: 291 LEGADRTSDLIVSMSNLLRYSLQKLDKPVTLQDEIAHIQEYAAIQQARFRERIRFEMDFD 350 +EGA TSD+I ++ LLRY+ + TL +EI ++++Y + R + I+ E+ + Sbjct: 400 VEGAKETSDMIYQLATLLRYTANHRE-ITTLGEEINYVKQYVRFMEMRHEQPIKLEIHIE 458 Query: 351 PSVLQEEIPALTLQPIVENAFLHGVANMESGAVISLVLRRTGGEVWIEISDNGVGMPEET 410 IP LQP++EN F + + V+++ + + +I DNG GM E Sbjct: 459 KRFNHTHIPRFALQPLIENFFKYAYKENQH-PVVTITVTAENNNLQFQIKDNGKGMDAEK 517 Query: 411 LQSILRLEAGAES-GKSTGLGTRNVLKRLQLFFGEEDLVRIHSRLGQGTTITIRIPAGKG 469 L+ + +A ES +++ +G N+ KRLQL +GE + I S+ +GT I ++P G Sbjct: 518 LKEV---QATIESKAETSHIGLANLNKRLQLLYGEAYSLTITSKPNEGTIILFQVPQNTG 574 Query: 470 GE 471 GE Sbjct: 575 GE 576 >BH0792 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 587 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 18/300 (6%) Query: 178 AALFGMNALMGVLLAVWASRSITGP----------VGRLVGLAKRIATGNLDIGPQPSR- 226 + LF M +L+ + SI P V LV K + +G L + + Sbjct: 279 SQLFHYKITMFLLILLLTVVSIALPYVSLRGYLTRVNDLVQTMKEVQSGQLSVRIETGNV 338 Query: 227 DDELGILSNAIQQMSADLSVLIERDKKSLEMQRLVKELELQALQSQINPHFLFNTLNVLS 286 DD+L ++SN + +L IE+ S Q E EL LQSQINPHFL+NTL + Sbjct: 339 DDDLAMISNTFNETLDELEDYIEKVYFSKLKQ---TEAELANLQSQINPHFLYNTLEAIR 395 Query: 287 RLALLEGADRTSDLIVSMSNLLRYSLQKLDKPVTLQDEIAHIQEYAAIQQARFRERIRFE 346 +L EG T+ +IV +S L RYSL+ D VT+ DE+ H+++Y + RF ++ F+ Sbjct: 396 MKSLSEGGRTTAKMIVQLSYLFRYSLKSAD-LVTIGDELQHVEQYVELFNIRFPNQLTFQ 454 Query: 347 MDFDPSVLQEEIPALTLQPIVENAFLHGVANMESGAVISLVLRRTGGEVWIEISDNGVGM 406 + + +P LQP++EN +HG I+++++ + I+I DNG G+ Sbjct: 455 VAVEEKHKHYVVPPFILQPLIENFLIHGFKRERDDNQINIIIQEKEQTLQIQIMDNGKGI 514 Query: 407 PEETLQSIL-RLEAGAESGKSTGLGTRNVLKRLQLFFGEEDLVRIHSRLGQGTTITIRIP 465 P + ++ I RL S S GL NV +RL+L +GE V + S T +TIR P Sbjct: 515 PRKKVEEINERLSMTENSSHSIGLF--NVNQRLRLRYGERFGVSVQSEPDVCTIVTIRTP 572 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,762,113 Number of extensions: 1360734 Number of successful extensions: 3467 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 3454 Number of HSP's successfully gapped: 28 Length of query: 471 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 361 Effective length of database: 25,691,691 Effective search space: 9274700451 Effective search space used: 9274700451 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)