BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0044.p (332 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic ... 213 4e-55 TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic ... 96 7e-20 BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic ... 93 5e-19 BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic ... 83 6e-16 PM1325 [G] COG1879 ABC-type sugar transport system, periplasmic ... 83 6e-16 >BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 332 Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 180/298 (60%), Gaps = 1/298 (0%) Query: 27 SFLQIHRLVEPLKXXXXXXXXXXXKVVLISQELDNYFWRSIEQGARKAAASYAMRLDYIG 86 SF+Q+ R VE VLI++E +N +WR +E+GAR+A + + ++Y Sbjct: 24 SFVQVTR-VETNVPSSTSISLPSSHFVLIAEEENNSYWRLVEKGAREAENQFDVLVEYKA 82 Query: 87 PDRINPAEQIKLLDKTIASKPDAILIQGLNNPDYRRLIDKATGLGIPVITVDTDEPESER 146 P R NP EQ+KL+D I++K D I++Q +N + LI+KA GIPVIT+DTD P S R Sbjct: 83 PKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTPLINKAVDAGIPVITIDTDAPRSNR 142 Query: 147 VAYVGTDNERAGRQMGELVVQASGERGDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQI 206 VAY+GTDN +G G+ ++ + V+ + ++ +Q+LR+ GF +I P + + Sbjct: 143 VAYIGTDNYYSGTIAGKAMLDDMEGDIHVAVITGSLESSHQKLRVQGFIDMISNEPRVTL 202 Query: 207 VEIRSSDISRLQAAQQAQKMLIQSPNIRFMVGFSSMDGLGFLEAKERLGATGLHIFAFDD 266 VE+ +S+ISRL+A +A +++ + P+I G S++DG+G + A E+LG L++ AFD Sbjct: 203 VEVEASNISRLEAELKAHQLMEEHPHINAFYGTSALDGIGIVAAAEKLGLDDLYVIAFDT 262 Query: 267 MEETVDAIRQSKIESAVVQQPVEMGEQAIEQLHDYFSGSPPPTLMYTKTYVITKESLN 324 + E + + Q KI++ VVQ+P EMG +++E L D G P +T T +I K L+ Sbjct: 263 LPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLDIREGQPYSMTNHTHTSIIRKPDLS 320 >TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 335 Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 2/238 (0%) Query: 63 FWRSIEQGARKAAASYAMRLDYIGPDRINPAEQIKLLDKTIASKPDAILIQGLNNPDYRR 122 +W +EQG + A + + + P + + Q+++L+ IA + I I + Sbjct: 44 YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIP 103 Query: 123 LIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVVQASGERGDIGVLISNE 182 I KA +GIPV+T+DTD P+S R Y+GTDN +AG G ++ + G +G + + + Sbjct: 104 TIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSL 163 Query: 183 QAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQAQKMLIQSPNIRFMVGFSSM 242 A N R+ GF+ I + ++IV+I + + +A A+ L P++ G + Sbjct: 164 TAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAY 222 Query: 243 DGLGFLEAKERLGATG-LHIFAFDDMEETVDAIRQSKIESAVVQQPVEMGEQAIEQLH 299 +G + G G + I FD + + +++ I++ + Q+P MG ++ L+ Sbjct: 223 NGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLY 280 >BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 335 Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 119/254 (46%), Gaps = 3/254 (1%) Query: 63 FWRSIEQGARKAAASYAMRLDYIGPDRINPAEQIKLLDKTIASKPDAILIQGLNNPDYRR 122 +W+ +G AA + + ++Y G + + EQI +L++ IA P I I ++ + Sbjct: 56 YWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD 115 Query: 123 LIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVVQASGERGDIGVLISNE 182 I+KA GIP++ D+ P+S +++GT+N AG + + G++ V+ Sbjct: 116 TINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPN 175 Query: 183 QAENQRLRLAGFRSVI-GRYPGLQIVEIRSSDISRLQAAQQAQKMLIQSPNIRFMVGFSS 241 Q +Q R GF+ + +P ++++ + L + + A ++L PN+ + + Sbjct: 176 QLNHQE-RTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEA 234 Query: 242 MDGLGFLEAKERLGATG-LHIFAFDDMEETVDAIRQSKIESAVVQQPVEMGEQAIEQLHD 300 G+G +A G + I +FD + T+D + + I + + Q MG ++ L Sbjct: 235 NGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFH 294 Query: 301 YFSGSPPPTLMYTK 314 G P ++ T+ Sbjct: 295 LHHGLTEPQILQTR 308 >BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 311 Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 5/264 (1%) Query: 59 LDNYFWRSIEQGARKAAASYAMRLDYIGPD-RINPAEQIKLLDKTIASKPDAILIQGLNN 117 L+N F+ ++++GA A + + +D I D + + A+QI ++ I D ILI ++ Sbjct: 52 LNNPFFVTLQEGAE--AKAEELGVDLITVDAQDDDAKQISDVEDLIQRGVDLILINPTDS 109 Query: 118 PDYRRLIDKATGLGIPVITVDTDEPESERVAYVGTDNERAGRQMGELVVQASGERGDIGV 177 I A GIPVITVD E V+++ +DN G GEL+ + GE ++ Sbjct: 110 TSVTSAIAAANAAGIPVITVDRGAEGGEVVSHIASDNVAGGEMAGELLKELVGEGAEVAE 169 Query: 178 LISNEQAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQAQKMLIQSPNIRFMV 237 L + R R GF +V L++ ++++ +R + + +L +P I + Sbjct: 170 LEGIPGSSAARERGEGFHNV--AEGSLEVAAKQTANFNRAEGLTVMENILQSNPEITGVF 227 Query: 238 GFSSMDGLGFLEAKERLGATGLHIFAFDDMEETVDAIRQSKIESAVVQQPVEMGEQAIEQ 297 + LG LEA + G + I FD ++ V A+ ++ V QQP +GE A+ Sbjct: 228 AHNDEMALGALEAIDAAGRDDIVIVGFDATDDAVAAVEAGRLAGTVAQQPTLIGETAVAT 287 Query: 298 LHDYFSGSPPPTLMYTKTYVITKE 321 SG + ++T E Sbjct: 288 AFSVLSGDDVEEFIPVDLELVTNE 311 >PM1325 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 314 Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 8/279 (2%) Query: 51 KVVLISQELDNYFWRSIEQGARKAAASYAMRLDYIGPDRINPAEQ-IKLLDKTIASKPDA 109 ++ L+ + L N ++ ++ QGA + A + L ++ + EQ + L++ IA K D Sbjct: 31 QIALLMKTLSNEYFITMRQGAEEKAKEVNIDLIVQVAEKEDSTEQLVGLVENMIAKKVDG 90 Query: 110 ILIQGLNNPDYRRLIDKATGLGIPVITVDT--DEPESERVA----YVGTDNERAGRQMGE 163 I++ ++ + KA GIP+I +D DE +++ YVG DN G + Sbjct: 91 IIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDEKATKKAGLKFNYVGVDNFHGGYLAAK 150 Query: 164 LVVQASGERGDIGVLISNEQAENQRLRLAGFRSVIGRYPGLQIVEIRSSDISRLQAAQQA 223 + QA E GD+ +L +N R AG P +++V +S++ QA Sbjct: 151 NLAQALNEMGDVAILEGIPGVDNGEQRKAGALKAFSESPNIKVVASQSANWETEQALNVT 210 Query: 224 QKMLIQSPNIRFMVGFSSMDGLGFLEAKERLGATG-LHIFAFDDMEETVDAIRQSKIESA 282 +L PNI+ + + LG + A E G G + + +D + ++ +++ K+++ Sbjct: 211 TNILTAHPNIKGIFAANDNMALGAVTAIENAGLAGKVLVSGYDGIPLAIEYVKKGKMQNT 270 Query: 283 VVQQPVEMGEQAIEQLHDYFSGSPPPTLMYTKTYVITKE 321 + Q P + AIE + + P Y V+ K+ Sbjct: 271 IDQLPKKQVAVAIESILKKLNKQELPDFYYVDPVVVDKQ 309 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,754,732 Number of extensions: 888556 Number of successful extensions: 1984 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 1970 Number of HSP's successfully gapped: 39 Length of query: 332 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 225 Effective length of database: 26,037,693 Effective search space: 5858480925 Effective search space used: 5858480925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)