BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0040.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 135 7e-32 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 125 6e-29 AGpA786 [R] COG0431 Predicted flavoprotein 125 6e-29 AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport... 125 6e-29 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 124 2e-28 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 4/256 (1%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQV--PLIVLFSLLIANV 97 W+ S F GL N+ + F D F+ ++ NN + + S+ QV LI+ L V Sbjct: 37 QWSSFSPEKTFIGLKNYVELFHDPVFYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLV 96 Query: 98 KKLKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVY--WLSDERFA 155 +K ++T F+P ++S VI +L+ FIY P GL N++L +G++ + WL D+ A Sbjct: 97 RKWSPFFRTVFFLPVVISMTVIALLFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTA 156 Query: 156 MLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXX 215 MLS++ + WQ G+ ++ + +I IP EL EAA +DGA + Q+ Sbjct: 157 MLSVIFVSQWQSVGYIAMLYIVSIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFV 216 Query: 216 XXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIFIFTL 275 GA + ++T GGP ++EV++T++ K A T GY +AIA ++ I TL Sbjct: 217 AVVMTLTGAFTVFNEPYILTGGGPGKASEVLSTFLYKSAFTKDMMGYASAIATVVLIITL 276 Query: 276 VVTVLYQLLFARRNER 291 ++++ F E Sbjct: 277 ALSLMQMKFFKTGKEE 292 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 12/257 (4%), Positives = 33/257 (12%), Gaps = 16/257 (6%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIA---- 95 S + + + Sbjct: 70 VVAIASRDAAKAKEMTARFGIARSYGS----YEDLLADPEIDAIYNPLPNHLHVPMTIKA 125 Query: 96 ----NVKKLKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVYWLSD 151 + + + + + + + Sbjct: 126 LEQGKPVLCEK----PIALDAAQARELATAQKAASLPVAEAFMVRHHPQWKKAHALITEG 181 Query: 152 ERFAMLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXX 211 + +I ++ V I AI+ A A Sbjct: 182 RLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFLFDAEPLRAIALME 241 Query: 212 XXXXXXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIF 271 + A + + ++ NA A Sbjct: 242 RDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLEIPIPFNAPADEPT 301 Query: 272 IFTLVVTVLYQLLFARR 288 + Sbjct: 302 VLIFDDGRDLAGGGREE 318 >AGpA786 [R] COG0431 Predicted flavoprotein Length = 323 Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 16/257 (6%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIA---- 95 WN +S + F G N+E+ W N+ W + VPL + +L+IA Sbjct: 70 EWNFLSPNMPFVGFRNYEQLLASRDLW----NSLWVTTLFAVLSVPLRLGLALVIAAYLV 125 Query: 96 ----NVKKLKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVYWLSD 151 +V+ L+G A+F+PS+ ST I +++ +++ + G+ N +LG G+ V WL + Sbjct: 126 RESVHVRLLRG----ALFLPSVTSTVSIAVVFSWVFSTDYGMANALLGTFGLGKVQWLQN 181 Query: 152 ERFAMLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXX 211 A+ ++ N W+ G+ IV+ +A + +IP EL +AAA+DG R R Sbjct: 182 PHLALWVLIFVNTWKQIGYDIVIYIAGLQAIPRELYDAAAVDGGKRLHVFRRITMPLVMP 241 Query: 212 XXXXXXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIF 271 A + IV VMTKGGPAG+T+++ + + + F G G+A+AVL+F Sbjct: 242 TTYFLLVISVIEAFQVFTIVNVMTKGGPAGATDMLVSLLYEIGFVLFDIGRGSALAVLLF 301 Query: 272 IFTLVVTVLYQLLFARR 288 I + + +L + R+ Sbjct: 302 ILLVGLAILKSRIIGRK 318 >AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Length = 373 Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 12/257 (4%), Positives = 33/257 (12%), Gaps = 16/257 (6%) Query: 40 SWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIA---- 95 S + + + Sbjct: 70 VVAIASRDAAKAKEMTARFGIARSYGS----YEDLLADPEIDAIYNPLPNHLHVPMTIKA 125 Query: 96 ----NVKKLKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVYWLSD 151 + + + + + + + Sbjct: 126 LEQGKPVLCEK----PIALDAAQARELATAQKAASLPVAEAFMVRHHPQWKKAHALITEG 181 Query: 152 ERFAMLSILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXX 211 + +I ++ V I AI+ A A Sbjct: 182 RLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFLFDAEPLRAIALME 241 Query: 212 XXXXXXXXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIAVLIF 271 + A + + ++ NA A Sbjct: 242 RDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLEIPIPFNAPADEPT 301 Query: 272 IFTLVVTVLYQLLFARR 288 + Sbjct: 302 VLIFDDGRDLAGGGREE 318 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 39 TSWNGVSDTVKFTGLSNFEKAFGDDRFWVSVKNNGWFILFSVFIQVPLIVLFSLLIANVK 98 T W+ VS T+ FTG N+++ F D FW S +N FI+ V ++ L L+ N K Sbjct: 41 TDWDLVS-TIHFTGFENYKRLFNDPEFWKSFRNTITFII-GYLPSVMILGLACALMLNQK 98 Query: 99 -KLKGLYKTAVFMPSIMSTAVIGILWGFIYEPNIGLFNKVLGIVGIEPVYWLSDERFAML 157 KL+ ++ F+P I S + ++W +++ P+ GL N L ++GI WL+D + AM+ Sbjct: 99 IKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMI 158 Query: 158 SILITNAWQWTGFYIVMVLAAILSIPGELDEAAAIDGASRFQRATRXXXXXXXXXXXXXX 217 +++IT+AW+ GF +V+ L + +I EAA +DGAS+ ++ Sbjct: 159 AVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVT 218 Query: 218 XXXXAGAMKAADIVIVMTKGGPAGSTEVMATYMIKYAITNFKYGYGNAIA 267 + + D V++MT+GGP+G+T + + +A F+ GY +A++ Sbjct: 219 IISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMS 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,696,077 Number of extensions: 596531 Number of successful extensions: 2319 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 2134 Number of HSP's successfully gapped: 145 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)