BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0039.p (469 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 91 5e-18 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 67 7e-11 APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic... 67 8e-11 PH1039 [G] COG1653 ABC-type sugar transport system, periplasmic ... 66 2e-10 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 65 3e-10 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 91/404 (22%), Positives = 178/404 (44%), Gaps = 30/404 (7%) Query: 73 KQKRLAILEDVVGKVQAEVPGLTFKLDGVDSDVNRKEKLRGEMAAGNPPEIFDLFGSPDS 132 K+ + E+VV + + + P + +++ V +D + K+K++ + +PP+I+ + + Sbjct: 42 KEPEKSYFEEVVKEFEKDHPDIDIQIEAVLND-SYKDKIKVMLGTTSPPDIYFSWSDEFA 100 Query: 133 KIYAKEGKLLDLTPILE---ELGIKDKFSNLDPFTYEGKIYGLPIGGSGEGFFYNKEYYT 189 + + K LDL+ + + + S + PFTYE K YG+P + FFYNK+ + Sbjct: 101 FKFIRGNKALDLSSYYKNDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQ 160 Query: 190 SKGWKAPTTFAELEKQLADIKADGKVPLAGASKAGWVPLMLANHLWSRYAGPDVTAK-FA 248 P T+ EL +K G P++ +KA W L R K + Sbjct: 161 KLNLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYN 220 Query: 249 TGEAKWSDPNVVKGFAKYKEWEDKGYFKKGELGFEYAEYTTQFTSGEAILMYDGTWKSSV 308 +++D VK K +E YF K ++ QF SG++ ++Y T + + Sbjct: 221 AKTGEFTDEGYVKALEKLQEL--MPYFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKL 278 Query: 309 FKAGQSGEGLIGKVGFFNIPPVDGGVGDQTALMRDVNNGYGFSASAGEDERQLAAVKSFI 368 + +G F P + G G AL G+ S+ + + F+ Sbjct: 279 VEPVN--------LGMFPFPEISGQKGSSEALT-GAPEGFMISSRTKHPKEAM----EFL 325 Query: 369 KNMYNEEMQIRGLVEDGVLPAMKIDQAVLNKNITDDLMSEIVAVLNNSESSFPAFDSLVQ 428 + + ++ M + + + G A+ Q + + E V + +++S P FD Sbjct: 326 QFLTSKRMGEKLVKDVGKYSAV---QGTATEENATAIQREAVQHIVDAKSMVPWFD---- 378 Query: 429 ADVTTEISNIQ---IQKLIGGQTTPEKMGEALQKVQEEANAAVE 469 DV E+++ +Q+++GG TP+++ +A+QK ++ A+ E Sbjct: 379 MDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAKQVRASAE 422 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 20/287 (6%) Query: 54 PASSEPFEMTIRHTQVGADKQKRLAILEDVVGKVQAEVPGLTFKLDGVDSDVNRKEKLRG 113 PA ++ E+TI + A+ + L + GK G ++ +D + + K +R Sbjct: 69 PALAQSSEVTIISAESNANTAEVLRRIAADFGKAA----GTKVVVNNMDHEAH-KTAIRN 123 Query: 114 EMAAGNPPEIFDLFGSPDSKIYAKEGKLLDLTPILEELGIKDKFSNL-----DPFTYEGK 168 + AG P F F + + G D++ + E K+K++++ T EGK Sbjct: 124 YLVAGAPDVCF-WFSGNRMRAFVTRGLFDDISDLFE----KEKYADVLGATAGSVTVEGK 178 Query: 169 IYGLPIGGSGEGFFYNKEYYTSKGWKAPTTFAELEKQLADIKADGKVPLAGASKAGWVPL 228 YGLP GG+ G FY K+ + G K PT++ +L K+ P+A +K W Sbjct: 179 QYGLPTGGTLWGMFYRKDVFDEHGLKVPTSWDDLLAFGEKCKSASLTPVAMGTKDLWPAA 238 Query: 229 MLANHLWSRYAGPDVTAKFATGEAKWSDPNVVKGFAKYKEWEDKGYFKKGELGFEYAEYT 288 + + R G D GE ++D + F ++E +G+F F + E Sbjct: 239 GWFDQMNLRINGLDKHFALMNGEMAYTDETLKPVFEHWEELIKQGFFTPDHTSFGWQEAG 298 Query: 289 TQFTSGEAILMYDGTWKSSVFKAGQSGEGLIGKVGFFNIPPVDGGVG 335 A +M G + + F + ++ F P ++ G+G Sbjct: 299 AFLAQKRAGMMNLGAFVRAAFPRQD-----LPQLTFAPFPVIEDGLG 340 >APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 452 Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 19/205 (9%) Query: 136 AKEGKLLDLTPILEELGIKDKFSN--LDPFTYEGKIYGLPIG-GSGEGFFYNKEYYTSKG 192 A++G ++++T ++ E D++ LD + K++G+P GF+Y K ++ G Sbjct: 146 AQKGHVIEVTGLINE----DEYVGGILDNVKWNNKLWGVPFTMWLKPGFWYKKSFFAKHG 201 Query: 193 WKAPTTFAELEKQLADIKA-DG-KVPLAGASKAGWVPLMLANHLWSRYAGPDVTAKFATG 250 P ++ E + L IK +G K P+ GW + H + GP++ K TG Sbjct: 202 LSEPNSWEEFLQLLDQIKGIEGIKNPIVSGDSVGWPLSDVTEHFIIAFGGPELQYKLITG 261 Query: 251 EAKWSDPNVVKGFAKYKEWEDKGYFKKGELGFEYAEYTTQFTSGEAILMYDGTWKSSVFK 310 E ++DP VV+ F K ++GYF + E+ ++ + E L + GTW + + + Sbjct: 262 EVSFTDPQVVEIFEKLAMLIEQGYFSE---PIEWTSAVEKWWAEEYALYFMGTWITGMVE 318 Query: 311 AGQSGEGLIGKVGFFNIPPVDGGVG 335 + FF +P G VG Sbjct: 319 DPND-------LAFFPLPGARGVVG 336 >PH1039 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 76/176 (43%), Gaps = 17/176 (9%) Query: 137 KEGKLLDLTPIL--EEL--GIKDKFSNLDPFTYEGKIYGLPIGGSGE-GFFYNKEYYTSK 191 K+G L++L I+ EE GI LD T +GKIYG P + + GF+Y K ++ Sbjct: 119 KKGHLMELNNIINPEEYVPGI------LDSVTVDGKIYGAPFTAAAKPGFWYRKSFFEKH 172 Query: 192 GWKAPTTFAELEKQLADIKADG--KVPLAGASKAGWVPLMLANHLWSRYAGPDVTAKFAT 249 K P T+ + L +IK K P+ GW + H + G D+ K Sbjct: 173 NLKPPKTWDDFVALLEEIKKIPGIKAPIVSGDSVGWPLSDVTEHFILTFGGKDLQLKLIK 232 Query: 250 GEAKWSDPNVVKGF-AKYKEWEDKGYFKKGELGFEYAEYTTQFTSGEAILMYDGTW 304 GE KW DP V K F K GYF E+ + GE L + GTW Sbjct: 233 GEVKWEDPQVRKIFEEKLVPLLKAGYFSD---PIEWTSAVDLWWKGEYALYFMGTW 285 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 22/206 (10%) Query: 136 AKEGKLLDLTPILEE----LGIKDKFSNLDPFTYEGKIYGLPIGGSGE-GFFYNKEYYTS 190 AK G ++DLT ++ GI DP TYEGKI+ P + GF+Y K ++ Sbjct: 135 AKRGHVVDLTNVINPNEYVTGI------FDPVTYEGKIWATPFTIVLKPGFWYRKSFFQQ 188 Query: 191 KGWKAPTTFAELEKQLADIKADGKVPLAGASKAGWVPLMLANHLWSRYAGPDVTAKFATG 250 G P T+ E + L +K G P+A GW + YAGPDV Sbjct: 189 HGLSEPQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEAFIIAYAGPDVFRGLTEK 248 Query: 251 EAKWSDPNVVKGFA-KYKEWEDKGYFKKGELGFEYAEYTTQFTSGEAILMYDGTWKSSVF 309 + K+ DP + F + +GYF + E E+ + ++ +G + + GTW + Sbjct: 249 KVKFDDPRINAVFRDRISLLLREGYFGEPE---EWTQAVEKWWNGTYGIYFMGTWILGMV 305 Query: 310 KAGQSGEGLIGKVGFFNIPPVDGGVG 335 VGFF +P G G Sbjct: 306 DNPDD-------VGFFPMPETKGITG 324 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,691,357 Number of extensions: 1502838 Number of successful extensions: 4233 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 4228 Number of HSP's successfully gapped: 16 Length of query: 469 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 359 Effective length of database: 25,691,691 Effective search space: 9223317069 Effective search space used: 9223317069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)