BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0031.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0428 [G] COG0395 ABC-type sugar transport system, permease co... 136 4e-32 TM0430 [G] COG0395 ABC-type sugar transport system, permease com... 130 2e-30 STM0430 [K] COG2188 Transcriptional regulators 130 2e-30 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 130 2e-30 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 125 5e-29 >CAC0428 [G] COG0395 ABC-type sugar transport system, permease component Length = 273 Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 147/281 (52%), Gaps = 13/281 (4%) Query: 14 LKKTSNKIVYGIMVFFILVMVFTMLYPILMTMFNGLKSNTEVNSFPPHFFPQEWHFGNLK 73 +KK +YG+ + L+ + ++Y + ++ L ++ SFPP F P+ + GN K Sbjct: 2 IKKIKISGIYGLNIILGLITIVPLIYALCVS----LMPQDQIFSFPPRFIPKGIYLGNYK 57 Query: 74 DALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYFFFLMTLFIPA 133 + L + ++ F+ N+ + +G +I +A+F+ S ++ +K+ + L TL IPA Sbjct: 58 EVLRSVPIIKFIVNSFIVSLGVTVFQIITSSMAAFAFSFLDFKGKKILFIAVLATLMIPA 117 Query: 134 TSYMIPNFVNLKELGLLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEAARIDGASEP 193 + +I N++ + LG L+ Y A +P + +++ ++ I E++EAA+IDG Sbjct: 118 ETTLISNYLTVGSLGWLDSYKALIVPYMCSAMGIFMMRQYYLTIPKELYEAAKIDGCGSF 177 Query: 194 RSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYKYVIAVKALN 253 F I +P+S P+ A+ I+ F +WN + WP LV E T+ I++ + Sbjct: 178 GFFTKILMPVSRPVIASFGIYSFLVSWNQYLWPLLVTSKESSRTVQIG-----ISMLQFS 232 Query: 254 TNIKFAILF----LVSLPPILVFLLFQKFIMRGVALSAVKG 290 N F ++ +V LP I++F++ QK ++ G+ AVKG Sbjct: 233 ENQSFGLIMAGIVIVLLPSIVIFIIGQKQLVDGMTSGAVKG 273 >TM0430 [G] COG0395 ABC-type sugar transport system, permease component Length = 271 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 134/261 (51%) Query: 29 FILVMVFTMLYPILMTMFNGLKSNTEVNSFPPHFFPQEWHFGNLKDALNYIDLLVFLRNT 88 FI+ M+ + P+ + + K +E+ S+PP FP++ + + DLL +LRNT Sbjct: 10 FIVFMLVVFMLPVFYAVVSSFKPMSEIYSYPPTIFPKKPSLEGYINVIKEYDLLTYLRNT 69 Query: 89 LYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYFFFLMTLFIPATSYMIPNFVNLKELG 148 L++ +T++V + + +++ + F MT+F+ A M+P FV ++ LG Sbjct: 70 LFVATVATVITVLVSVMTGYGLAKGKFWGIRPVNSMFTMTMFVSAQVIMVPLFVVIRSLG 129 Query: 149 LLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEAARIDGASEPRSFFSIAVPLSIPIF 208 L+N +PA + + I E+ E+A+IDGA+E + F+ I PLS P+ Sbjct: 130 LINSLWGLIIPAVYTPTGMFMAVQYMKDIPDELLESAKIDGANEWQIFWRIVFPLSKPLV 189 Query: 209 ATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYKYVIAVKALNTNIKFAILFLVSLPP 268 A LAIF F+ WND+ P LV++ + YTL A+ N A L +P Sbjct: 190 AALAIFSFTWRWNDFVLPLLVVNRRNLYTLQLALATIQEEYGGAEWNTILAFSTLTIIPT 249 Query: 269 ILVFLLFQKFIMRGVALSAVK 289 +++FLLFQ+ M+G+ +K Sbjct: 250 LIIFLLFQRLFMKGIMAGGLK 270 >STM0430 [K] COG2188 Transcriptional regulators Length = 239 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 0/261 (0%), Positives = 0/261 (0%) Query: 29 FILVMVFTMLYPILMTMFNGLKSNTEVNSFPPHFFPQEWHFGNLKDALNYIDLLVFLRNT 88 L++ + I F L L+ Sbjct: 10 QYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADRR 69 Query: 89 LYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYFFFLMTLFIPATSYMIPNFVNLKELG 148 + + R K ++T + + Sbjct: 70 GWFVTPERLWLDPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMEPLQLQPFDQIYL 129 Query: 149 LLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEAARIDGASEPRSFFSIAVPLSIPIF 208 L A + L + + + + + S+ + Sbjct: 130 LTRLRYADGRAVCYCENHCLPARVPELLQYDLNGSLTEVYESHYNLVYTSMHLSFYPTAM 189 Query: 209 ATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYKYVIAVKALNTNIKFAILFLVSLPP 268 Sbjct: 190 249 Query: 269 ILVFLLFQKFIMRGVALSAVK 289 Sbjct: 250 270 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 145/277 (52%), Gaps = 3/277 (1%) Query: 16 KTSNKIVYGIMVFFIL-VMVFTMLYPILMTMFNGLKSNTE-VNSFPPHFFPQEWHFGNLK 73 KT N ++++ +L V+ F L+P+L + LKS TE + PP P + N Sbjct: 4 KTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFF 63 Query: 74 DALNYIDLLVFLRNTLYIFVGNMAVTLIVLGLASFSISRMNVPYRKVFYFFFLMTLFIPA 133 N + +L N+ + V + + L+ LA++ ++R++ P R + + T+ IP Sbjct: 64 KVWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPF 123 Query: 134 TSYMIPNFVNLKELGLLNQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEAARIDGASEP 193 MIP ++ +LGL N Y P+ A+ F LL+ F G+ EI EAAR+DG+SE Sbjct: 124 QIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLLRQAFMGVPKEIEEAARMDGSSEL 183 Query: 194 RSFFSIAVPLSIPIFATLAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYKYVIAVKALN 253 ++ I +P P TLAIF+F AW+D+ WP +V+ E+ YTL + K + +L+ Sbjct: 184 GLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAK-LAGTFSLD 242 Query: 254 TNIKFAILFLVSLPPILVFLLFQKFIMRGVALSAVKG 290 + A + P +L+FL+ Q++I+ S VKG Sbjct: 243 WRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG 279 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 35 FTMLYPILMTMFNGLKSNTEVNSFPPHFFPQEWHFGNLKDALNYIDLLVFLRNTLYI--- 91 F M+ P + + + LK++ E+ PP +P+ + N +D ++L+NTL I Sbjct: 24 FFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFF 83 Query: 92 -FVGNMAVTLIVLGLASFSISRMNVPYRKVFYFFFLMTLFIPATSYMIPNFVNLKELGLL 150 F G L + +A + ++ + ++ L T+ IP MIP ++ L GL Sbjct: 84 SFFG-----LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLT 138 Query: 151 NQYAAFWLPAGANTFYFLLLKNFFDGIHPEIFEAARIDGASEPRSFFSIAVPLSIPIFAT 210 N LP F L + F I ++ EAAR+DGASE F+ I +P+S P+ A Sbjct: 139 NTMTGIVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAV 198 Query: 211 LAIFIFSTAWNDWFWPSLVMHSEDKYTLATAIYKYVIAVKALNTNIKFAILFLVSLPPIL 270 I F WN + WP ++ + E YTL+ + + + N ++ A + +P IL Sbjct: 199 QGILTFIAGWNSFLWPLIIANDEKFYTLSVGL-QLLKGQYGSNYALQMAGATFMVIPIIL 257 Query: 271 VFLLFQKFIMRGVALSAVK 289 +F+ FQK+I++G +S +K Sbjct: 258 IFMTFQKYILKGFNVSGMK 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,071,215 Number of extensions: 746376 Number of successful extensions: 3794 Number of sequences better than 1.0e-05: 149 Number of HSP's gapped: 3622 Number of HSP's successfully gapped: 149 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)