BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0026.p (209 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase 171 8e-43 lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase 168 7e-42 all1058_2 [R] COG0637 Predicted phosphatase/phosphohexomutase 166 2e-41 CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase 164 1e-40 ycjU [R] COG0637 Predicted phosphatase/phosphohexomutase 150 1e-36 >BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 14/207 (6%), Positives = 30/207 (14%), Gaps = 2/207 (0%) Query: 5 MKGAIFDLDGVIVDTAKYHYLAWRSLAADLGFEFTEAHNERLKGVSRMRSLDILLEIGGL 64 M+ + V T + + ++ + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 65 E--FDEAEKAAMAERKNRRYVDYISRLDDSELLPGVREYLGRLKERGIGIALGSASKNAV 122 E + R I+ + I Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 123 FILDKLKITGLFDAVVDGNTVSRAKPDPEVFQTACRRLGLQPTDCVVFEDXXXXXXXXXX 182 D L + + N + A L Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 183 XGMRVVGIGKREKLAAADVVITGLHEL 209 V I + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNP 207 >lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 20/211 (9%), Positives = 37/211 (17%), Gaps = 2/211 (0%) Query: 1 MLEHMKGAIFDLDGVIVDTAKYHYLAWRSLAADLGFEFTEAHNERLKGVSRMRSLDILLE 60 M H + A ++ A L V+ M + E Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 IGGLE--FDEAEKAAMAERKNRRYVDYISRLDDSELLPGVREYLGRLKERGIGIALGSAS 118 GL + A R+ +S + + K + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 119 KNAVFILDKLKITGLFDAVVDGNTVSRAKPDPEVFQTACRRLGLQPTDCVVFEDXXXXXX 178 ++ G L Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 179 XXXXXGMRVVGIGKREKLAAADVVITGLHEL 209 MR + + + L + L Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLL 211 >all1058_2 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 10/202 (4%), Positives = 34/202 (16%), Gaps = 2/202 (0%) Query: 5 MKGAIFDLDGVIVDTAKYHYLAWRSLAADLGFEFTEAHNERLKGVSRMRSLDILLEIGGL 64 + + ++ + + T + + A + Sbjct: 6 IPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVP--PRPETQG 63 Query: 65 EFDEAEKAAMAERKNRRYVDYISRLDDSELLPGVREYLGRLKERGIGIALGSASKNAVFI 124 + +A+ +R + S++ + +R S + Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 125 LDKLKITGLFDAVVDGNTVSRAKPDPEVFQTACRRLGLQPTDCVVFEDXXXXXXXXXXXG 184 + + L Sbjct: 124 DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETA 183 Query: 185 MRVVGIGKREKLAAADVVITGL 206 V+ ++T Sbjct: 184 FGVMRYLHLADKHDLPRIVTIQ 205 >CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 14/187 (7%), Positives = 27/187 (14%) Query: 5 MKGAIFDLDGVIVDTAKYHYLAWRSLAADLGFEFTEAHNERLKGVSRMRSLDILLEIGGL 64 V ++ AD + A + + + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 65 EFDEAEKAAMAERKNRRYVDYISRLDDSELLPGVREYLGRLKERGIGIALGSASKNAVFI 124 E + R I+ + I Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 125 LDKLKITGLFDAVVDGNTVSRAKPDPEVFQTACRRLGLQPTDCVVFEDXXXXXXXXXXXG 184 D L + + N + A L Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 185 MRVVGIG 191 V Sbjct: 183 AFGVMRY 189 >ycjU [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 11/189 (5%), Positives = 27/189 (14%), Gaps = 2/189 (1%) Query: 5 MKGAIFDLDGVIVDTAKYHYLAWRSLAADLGFEFTEAHNERLKGVSRMRSLDILLEIGGL 64 V ++ AD + A + + + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 65 E--FDEAEKAAMAERKNRRYVDYISRLDDSELLPGVREYLGRLKERGIGIALGSASKNAV 122 + + S L + I AL + K Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 123 FILDKLKITGLFDAVVDGNTVSRAKPDPEVFQTACRRLGLQPTDCVVFEDXXXXXXXXXX 182 L + + + Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 183 XGMRVVGIG 191 + + Sbjct: 183 AFGVMRYLH 191 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.140 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,504,637 Number of extensions: 612091 Number of successful extensions: 2107 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 2064 Number of HSP's successfully gapped: 76 Length of query: 209 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 107 Effective length of database: 26,614,363 Effective search space: 2847736841 Effective search space used: 2847736841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 113 (48.1 bits)