BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0015.p
         (71 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1934 [K] COG1476 Predicted transcriptional regulators              100   6e-22
SP1423 [K] COG1476 Predicted transcriptional regulators                87   6e-18
BH0364 [K] COG1476 Predicted transcriptional regulators                74   6e-14
SP0333 [K] COG1476 Predicted transcriptional regulators                61   3e-10
MA4668 [K] COG1476 Predicted transcriptional regulators                60   6e-10

>SPy1934 [K] COG1476 Predicted transcriptional regulators
          Length = 68

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 3  KNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELF 62
          KNL+LKA+RA KD+SQ+ LAD VGV+RQTI A+E GDYNPTI LCI IC  L KTLD+LF
Sbjct: 2  KNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61

Query: 63 WEGD 66
          WE D
Sbjct: 62 WEAD 65


>SP1423 [K] COG1476 Predicted transcriptional regulators
          Length = 79

 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 1  MGKNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDE 60
          + KNL+LK +R  +D++Q QLA+AVGVTRQTI  IE G YNP++ LC  IC  LGKTLD+
Sbjct: 11 VAKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQ 70

Query: 61 LFWE 64
          LFWE
Sbjct: 71 LFWE 74


>BH0364 [K] COG1476 Predicted transcriptional regulators
          Length = 66

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 7  LKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELFWEGD 66
          +K +R    M+Q+QLA  VGVTRQTI  IE G+YNP+++LC+ I   L KTLD+LFWE D
Sbjct: 5  VKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLFWEVD 64

Query: 67 K 67
          +
Sbjct: 65 E 65


>SP0333 [K] COG1476 Predicted transcriptional regulators
          Length = 64

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6  RLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELFWEG 65
          R+K  R    +SQ +LA  +GV+RQTI  IEN  YNPT+ LC+ +  +L   L+ LFWE 
Sbjct: 3  RVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWEE 62

Query: 66 D 66
          D
Sbjct: 63 D 63


>MA4668 [K] COG1476 Predicted transcriptional regulators
          Length = 79

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 6  RLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELFWEG 65
          R+K  RA  D++Q+ LA  VGV R+T++ +E G YNP+++L   I   L  TLDELF   
Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELFIFE 74

Query: 66 DKHGE 70
          D   E
Sbjct: 75 DSDFE 79


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,982,895
Number of extensions: 143682
Number of successful extensions: 533
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 14
Length of query: 71
Length of database: 38,378,431
Length adjustment: 42
Effective length of query: 29
Effective length of database: 33,534,403
Effective search space: 972497687
Effective search space used: 972497687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)