BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0012.p
         (49 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0849 [K] COG1733 Predicted transcriptional regulators               71   4e-13
BH3303 [K] COG1733 Predicted transcriptional regulators                69   3e-12
lin1183 [K] COG1733 Predicted transcriptional regulators               66   1e-11
BS_yvaP [K] COG1733 Predicted transcriptional regulators               65   2e-11
BH0508 [K] COG1733 Predicted transcriptional regulators                65   3e-11

>CAC0849 [K] COG1733 Predicted transcriptional regulators
          Length = 102

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 38/48 (79%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWV 48
            ++LE +GI+VR VY ETPVRIEYELT KGR LE VMQ+IQ WAE W 
Sbjct: 55  FRELEKQGIVVRKVYAETPVRIEYELTEKGRELESVMQEIQKWAEKWT 102


>BH3303 [K] COG1733 Predicted transcriptional regulators
          Length = 107

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 41/49 (83%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
           +KDLE  GI+ R VYPETPVRIEY LT KG ALEPV++++++W++ W++
Sbjct: 54  LKDLEQHGIVKRDVYPETPVRIEYSLTEKGLALEPVLKKVEAWSQEWLD 102


>lin1183 [K] COG1733 Predicted transcriptional regulators
          Length = 107

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
           +K+LE   I +R VYPETPVRIEYELT KG+AL+ VM ++Q WA+ WVE
Sbjct: 56  LKELEEMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKWVE 104


>BS_yvaP [K] COG1733 Predicted transcriptional regulators
          Length = 236

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
           +K+LE EG++ R V PETPVRIEY LT KG+AL P++ +I  WA  W++
Sbjct: 138 LKELELEGVVKRDVIPETPVRIEYSLTDKGKALAPILGEISKWATEWID 186


>BH0508 [K] COG1733 Predicted transcriptional regulators
          Length = 102

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESW 47
           MK+LE   +++RHVYPE PVRIEYELT KG+ L PV++ IQ W E W
Sbjct: 55  MKELEQLEVVIRHVYPEKPVRIEYELTEKGKDLTPVIEAIQQWGEKW 101


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,987,846
Number of extensions: 111966
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 13
Length of query: 49
Length of database: 38,378,431
Length adjustment: 22
Effective length of query: 27
Effective length of database: 35,841,083
Effective search space: 967709241
Effective search space used: 967709241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)