BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0009.p
         (204 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2293 [S] COG0398 Uncharacterized conserved protein                   91   1e-18
BS_yqeD [S] COG0398 Uncharacterized conserved protein                  70   3e-12
ydjX [S] COG0398 Uncharacterized conserved protein                     50   2e-06
ZydjX [S] COG0398 Uncharacterized conserved protein                    50   2e-06

>BH2293 [S] COG0398 Uncharacterized conserved protein
          Length = 212

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)

Query: 13  GIFLAFIYRYD--ILAWLRQD--HNXXXXXXXXXXXXXFPVVPYKLIIGIYGYAYGSLTA 68
           G+  A IY Y   +L W++Q                  FP++PY +I G+ G AYG    
Sbjct: 12  GVIAALIYLYGEWLLEWIQQGGARFIFLTVIIATLLALFPIIPYPIIGGVLGAAYGPFLG 71

Query: 69  ALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKFTSAVQRRPFAAVVLARLVPV 128
           + + W  S+LA  +++  V+Y +++     +     + K T+  ++  F A+ + RL+P+
Sbjct: 72  SAVTWIGSSLASIIMFMFVRYGYQDWGLSLIRRSDLVTKVTAMFEKNAFMAIFITRLIPI 131

Query: 129 IPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGGQLFDHPRN 176
           IP + VNIY+  + + F +Y  AS LGK+P + L+A +G  +  +P  
Sbjct: 132 IPSIIVNIYSALSRVSFINYSIASSLGKVPSMILFAVVGNSIATNPSQ 179


>BS_yqeD [S] COG0398 Uncharacterized conserved protein
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%)

Query: 47  FPVVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALG 106
           FP+VP+ LI  + G  +G+     I  + S L   +++ + +Y F++ A K + +  A+ 
Sbjct: 50  FPIVPFALIAALNGAVFGTANGIWITLTGSMLGTILLFFLARYSFRDWARKKVQAYPAIQ 109

Query: 107 KFTSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFL 166
            + ++  +  F AV+L RL+PVIP + +N+  G + + +  +  AS +GKIP I +    
Sbjct: 110 SYEASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKIPNIVVVTIA 169

Query: 167 GGQ 169
           G  
Sbjct: 170 GAN 172


>ydjX [S] COG0398 Uncharacterized conserved protein
          Length = 252

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 56/122 (45%)

Query: 49  VVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKF 108
           ++P  +++   G  +G L   L+   A+TLA +  + + +++ ++   KY+   +     
Sbjct: 78  LLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAI 137

Query: 109 TSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGG 168
              + R     ++L RL+P+ P    N   G   + FW Y   S L  +PGI +Y  +  
Sbjct: 138 EKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMAS 197

Query: 169 QL 170
            L
Sbjct: 198 DL 199


>ZydjX [S] COG0398 Uncharacterized conserved protein
          Length = 252

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 56/122 (45%)

Query: 49  VVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKF 108
           ++P  +++   G  +G L   L+   A+TLA +  + + +++ ++   KY+   +     
Sbjct: 78  LLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAI 137

Query: 109 TSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGG 168
              + R     ++L RL+P+ P    N   G   + FW Y   S L  +PGI +Y  +  
Sbjct: 138 EKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMAS 197

Query: 169 QL 170
            L
Sbjct: 198 DL 199



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 56/122 (45%)

Query: 49  VVPYKLIIGIYGYAYGSLTAALICWSASTLAGAVIYAVVKYMFKEKAGKYLTSVSALGKF 108
           ++P  +++   G  +G L   L+   A+TLA +  + + +++ ++   KY+   +     
Sbjct: 78  LLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAI 137

Query: 109 TSAVQRRPFAAVVLARLVPVIPQMGVNIYAGAAGLPFWSYLAASGLGKIPGIALYAFLGG 168
              + R     ++L RL+P+ P    N   G   + FW Y   S L  +PGI +Y  +  
Sbjct: 138 EKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMAS 197

Query: 169 QL 170
            L
Sbjct: 198 DL 199


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.327    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,182,848
Number of extensions: 452471
Number of successful extensions: 1299
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 103
Effective length of database: 26,729,697
Effective search space: 2753158791
Effective search space used: 2753158791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)