BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0020.p
         (126 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ytcD [K] COG1733 Predicted transcriptional regulators              157   3e-39
BH3884 [K] COG1733 Predicted transcriptional regulators               149   1e-36
lin0869 [K] COG1733 Predicted transcriptional regulators              137   6e-33
lin1899 [K] COG1733 Predicted transcriptional regulators              131   2e-31
L133547 [K] COG1733 Predicted transcriptional regulators              122   1e-28

>BS_ytcD [K] COG1733 Predicted transcriptional regulators
          Length = 126

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 87/113 (76%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN +VEATLEVIGGKWK VIL  LT GKKR  E   LMP ITQK+LTQQLRELE DGV
Sbjct: 4   KKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGV 63

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQP 122
           I R VYN+VPP+VEYEL++YG SL+ IL ++C WG  HI RVYGD  +VL + 
Sbjct: 64  INRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEES 116


>BH3884 [K] COG1733 Predicted transcriptional regulators
          Length = 128

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 86/115 (74%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K Y   VEA LEV+GGKWKP+I++ L  G+KR  E   LMP ITQK+LT QLR LE+D +
Sbjct: 11  KKYQVGVEAALEVMGGKWKPLIIYHLMTGRKRTSELRRLMPAITQKMLTTQLRGLEKDEI 70

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQPQT 124
           I R VYNEVPP+VEYELT YGW LK  L L+C WG+ H+E+VYGD++ VL + Q+
Sbjct: 71  ITRKVYNEVPPKVEYELTPYGWGLKPALDLLCYWGEDHLEKVYGDKSKVLEEFQS 125


>lin0869 [K] COG1733 Predicted transcriptional regulators
          Length = 117

 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 78/100 (78%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN  VEATLEVIGGKWKPVIL  L  GKKR GE   L+P ITQK+LTQQLRELE+ GV
Sbjct: 3   KVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKSGV 62

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIE 109
           I R VY ++PP+VEY L++YG SL EIL+ +C WG+ H++
Sbjct: 63  IIRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVD 102


>lin1899 [K] COG1733 Predicted transcriptional regulators
          Length = 120

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 75/100 (75%)

Query: 9   IKTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDG 68
           +K YN  VEATL+++GGKWKP+I+ FL  G KR GE    +P I+QKVL QQLRELE DG
Sbjct: 1   MKVYNLGVEATLDIMGGKWKPLIICFLVQGTKRTGELQRCIPKISQKVLVQQLRELERDG 60

Query: 69  VIKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHI 108
           +I RTVYNE+PP+VEY +T YG +L  I+  MC+WG  +I
Sbjct: 61  IIDRTVYNELPPKVEYSITAYGLTLNAIVDTMCQWGKENI 100


>L133547 [K] COG1733 Predicted transcriptional regulators
          Length = 115

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 78/112 (69%), Gaps = 2/112 (1%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN  VEAT++VIGGKWKP+IL  L     R GE    +P I+QK+LTQQLRELE D +
Sbjct: 3   KIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRQIPGISQKMLTQQLRELEIDNI 62

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIE--RVYGDQAAVL 119
           I R VYN+VPP+VEY L+ YG +L  +L ++C WG+ H++  +  G++  VL
Sbjct: 63  IVRKVYNQVPPKVEYSLSPYGETLNGLLDILCSWGEGHVQTLKSMGEEVQVL 114


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,682,367
Number of extensions: 347441
Number of successful extensions: 744
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 72
Length of query: 126
Length of database: 38,378,431
Length adjustment: 92
Effective length of query: 34
Effective length of database: 27,767,703
Effective search space: 944101902
Effective search space used: 944101902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)