BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0018.p
         (150 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykuP [C] COG0716 Flavodoxins                                       135   2e-32
BS_ykuN [C] COG0716 Flavodoxins                                       125   2e-29
lin1822 [C] COG0716 Flavodoxins                                       122   2e-28
MA2699 [C] COG0716 Flavodoxins                                        113   1e-25
CAC0587 [C] COG0716 Flavodoxins                                        68   5e-12

>BS_ykuP [C] COG0716 Flavodoxins
          Length = 178

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 1/143 (0%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCN-ADEIKAYEGVLLGAYTW 59
           MAK+L+ YA+++GNTE +A+LI +G+++A  E       D + A     Y+ V++G YTW
Sbjct: 1   MAKILLVYATMSGNTEAMADLIEKGLQEALAEVDRFEAMDIDDAQLFTDYDHVIMGTYTW 60

Query: 60  GDGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQE 119
           GDG+LPDEFLD  E+M+E+D +    A FGSGDT YE +CGAV+ +E K++ERG +IV  
Sbjct: 61  GDGDLPDEFLDLVEDMEEIDFSGKTCAVFGSGDTAYEFFCGAVDTLEAKIKERGGDIVLP 120

Query: 120 SLKIEYGPNAAEKEACRSFGRQF 142
           S+KIE  P   E+E   +FGRQF
Sbjct: 121 SVKIENNPEGEEEEELINFGRQF 143


>BS_ykuN [C] COG0716 Flavodoxins
          Length = 158

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 1/144 (0%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           MAK L+ YAS++GNTE+IA +I + +++   +     + D +A  + +Y+ VL+G YTWG
Sbjct: 1   MAKALITYASMSGNTEDIAFIIKDTLQEYELDIDCVEINDMDASCLTSYDYVLIGTYTWG 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQES 120
           DG+LP E  DF+EE+ ++ L   K A FGSGD  Y  +C AVN     L+E GA + QE+
Sbjct: 61  DGDLPYEAEDFFEEVKQIQLNGLKTACFGSGDYSYPKFCEAVNLFNVMLQEAGAAVYQET 120

Query: 121 LKIEYGPNAAEK-EACRSFGRQFI 143
           LKIE  P   E  E+CR+F R F+
Sbjct: 121 LKIELAPETDEDVESCRAFARGFL 144


>lin1822 [C] COG0716 Flavodoxins
          Length = 148

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 95/144 (65%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           M KV++ YAS+TGNT+EIA+++ E + +   E  ++     + +++  Y+G L+G YT+ 
Sbjct: 1   MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPEDLLEYDGALIGGYTYD 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQES 120
           DG+LPDEF+DFYE+M ++D +    A+FGSGDT Y+ YC  V+ +E +L+E+GA +    
Sbjct: 61  DGQLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTVDLVETRLKEQGATVPVAG 120

Query: 121 LKIEYGPNAAEKEACRSFGRQFIE 144
           LK++  P+  +     S+ + F+E
Sbjct: 121 LKVDLDPDEEDVVRAESYAKTFVE 144


>MA2699 [C] COG0716 Flavodoxins
          Length = 147

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 82/124 (66%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           M K ++ Y S TGNTE +AE I   + +  G+  L  VTD +  ++  Y+ +LLG  TWG
Sbjct: 1   MEKTIIVYGSSTGNTEILAEEIKGTLEKYDGKVKLMEVTDLHPTDLANYDTILLGCSTWG 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQES 120
           DGEL D+F+ F EEM+ +DL   KAA FG GD+ + ++C AV+ +EEKL+  GA+I+ E 
Sbjct: 61  DGELQDDFIPFEEEMEGVDLKGKKAACFGPGDSTFPLFCNAVDLLEEKLKSCGAQIIVEG 120

Query: 121 LKIE 124
           LKI+
Sbjct: 121 LKID 124


>CAC0587 [C] COG0716 Flavodoxins
          Length = 142

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 9/148 (6%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           M K+ + Y S TGNTE +A LI EG + AG +  L +V+D + D++K  + ++LG+   G
Sbjct: 1   MVKINIIYCSGTGNTEAMANLISEGAKSAGADVQLINVSDADVDKVKNADVIVLGSPAMG 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGS---GDTGYEIYCGAVNQIEEKLRERGAEIV 117
           D  L +E ++ + E    ++   K A FGS   GD  +      +    E++   GA+++
Sbjct: 61  DEVLEEEEMEPFVENISKEVKGKKVALFGSYGWGDGQF------MRDWVERMEGYGADLI 114

Query: 118 QESLKIEYGPNAAEKEACRSFGRQFIET 145
            E L ++  P    ++ CR FG+  I +
Sbjct: 115 GEGLIVQDAPEGETEDQCREFGKALINS 142


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,363,646
Number of extensions: 463575
Number of successful extensions: 949
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 38
Length of query: 150
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 53
Effective length of database: 27,191,033
Effective search space: 1441124749
Effective search space used: 1441124749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)