BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0004.p
         (64 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykwD [S] COG2340 Uncharacterized protein with SCP/PR1 domains       90   6e-19
BH1803_2 [S] COG2340 Uncharacterized protein with SCP/PR1 domains      80   5e-16
BH2878 [S] COG2340 Uncharacterized protein with SCP/PR1 domains        56   1e-08
DR1548 [S] COG2340 Uncharacterized protein with SCP/PR1 domains        55   2e-08
BS_ylbC [S] COG2340 Uncharacterized protein with SCP/PR1 domains       53   9e-08

>BS_ykwD [S] COG2340 Uncharacterized protein with SCP/PR1 domains
          Length = 257

 Score = 90.1 bits (222), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM +FG++Y+ AGENIA GQ+TP+EV+ AWMNS GHR NIL+ NF +IGVG+    + W 
Sbjct: 192 MMKSFGISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNPNFTHIGVGYVESGSIWT 251

Query: 59  QEFIGK 64
           Q+FIGK
Sbjct: 252 QQFIGK 257


>BH1803_2 [S] COG2340 Uncharacterized protein with SCP/PR1 domains
          Length = 132

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFDN-----N 55
           M+  FG++Y+ +GENIA GQ TPQ V  AWMNS+GHR NILS+N+  IGVG+       +
Sbjct: 64  MIRNFGISYRSSGENIAAGQSTPQAVFQAWMNSSGHRQNILSSNYTEIGVGYARGGSYGH 123

Query: 56  YWVQEFIGK 64
           YW Q FIG+
Sbjct: 124 YWTQMFIGR 132


>BH2878 [S] COG2340 Uncharacterized protein with SCP/PR1 domains
          Length = 257

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVG 51
           MM  FG+ ++ AGEN+A G +T +    A MNS GHRANILS N+  IGVG
Sbjct: 191 MMRQFGIEFRTAGENLA-GNQTVEAAHQALMNSQGHRANILSPNYTEIGVG 240


>DR1548 [S] COG2340 Uncharacterized protein with SCP/PR1 domains
          Length = 202

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 6   GVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFD-------NNYWV 58
           G  ++ AGENIA G  TP+ ++  W+ S GH ANI++  F  IGVG+         +YWV
Sbjct: 136 GYGWRTAGENIAAGYDTPEALVQGWLQSPGHCANIMNPAFKEIGVGYSYGAASSYGHYWV 195

Query: 59  QEF 61
           Q+F
Sbjct: 196 QDF 198


>BS_ylbC [S] COG2340 Uncharacterized protein with SCP/PR1 domains
          Length = 349

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 5/58 (8%), Positives = 7/58 (12%)

Query: 7   VTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFDNNYWVQEFIGK 64
                        Q                   I   +  Y  +  D  Y        
Sbjct: 288 RELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKN 345


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,007,181
Number of extensions: 173456
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 7
Length of query: 64
Length of database: 38,378,431
Length adjustment: 36
Effective length of query: 28
Effective length of database: 34,226,407
Effective search space: 958339396
Effective search space used: 958339396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)