BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0015.p
         (381 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2926 [G] COG2182 Maltose-binding periplasmic proteins/domains        71   2e-12
YPO3714 [G] COG2182 Maltose-binding periplasmic proteins/domains       51   2e-06

>BH2926 [G] COG2182 Maltose-binding periplasmic proteins/domains
          Length = 429

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 155/400 (38%), Gaps = 78/400 (19%)

Query: 20  DTSIEVLEQLCRAYTSKSGVSVIPEVMNITVLTA--RLQQIKAGGAGPHMALVPADMAG- 76
           D  +   EQ+   Y  ++G+SV  E+   ++L     L    A G GP +   P D  G 
Sbjct: 66  DAQLSAYEQIVEKYEEETGISV--EITPFSMLDQLDALSLDAAAGGGPDLFFQPNDRMGD 123

Query: 77  -YAEG--AMYSEIPEKFWSMSGLPDVDIRSSMQSNGRQYGIPILKGNHLVLYYNPEIYPE 133
            Y +G  A     PE+   + G P+  I  ++   G Q GIP +   +  L+YN E+ PE
Sbjct: 124 IYLQGLAAELELTPEQ---LEGYPEGAI-DALNYEGAQLGIPAVIETY-ALFYNTELVPE 178

Query: 134 APASWXXXXXXXXXXXXKGIVPVAADL----ADPYCFI----------PFLTAFGGWPLK 179
           AP ++            + +  +AA+L    AD Y F+          PFL A GG+   
Sbjct: 179 APETF------------EEMEQIAAELTNASADEYGFLMEATNFYYLYPFLEAHGGY--- 223

Query: 180 EGNPDLASFEMDAALRFVQRQIAHKVLGSFHGPTELLDRFXXXXXXXXXXXXXXYNYL-D 238
                   FE DA   +    I     G+  G + +   F                Y  D
Sbjct: 224 -------VFEQDAEGVYDSASIGLANEGAIEGASLIQSWFEEGYLPVGINGDIMSGYFRD 276

Query: 239 LQ-----------------MRDRLLVGPLPSINGNPAASMSSSIGLVFPQHSLESEQADE 281
            Q                 + D L V PLP ING   AS S   G +  ++S     A +
Sbjct: 277 GQVGAVITGPWSIPEFSEALGDNLAVAPLPKINGKNPASFSGVKGWLVNEYSANQYWATD 336

Query: 282 LLSFAAYLLNESSQLEWAERVQRIPVHSRV-LDNIKAAASPARAKLITCLENARNMPIEP 340
           L   A ++ N  + L + E    +P  + V +D+        R  ++   E A  MP  P
Sbjct: 337 L---ALFITNPENSLTYFEVAGELPARTDVEIDD------ELRQPILEQSEYAVPMPNIP 387

Query: 341 VMRNIWDAMAVGLQHLAD-EDAARIMRLMNEHVNSSLIQQ 379
            M ++W+ M    + ++  ED A ++    + +   +  Q
Sbjct: 388 AMSSVWEPMEDAFEFISQGEDPAEVLEEAVQQIADKITLQ 427


>YPO3714 [G] COG2182 Maltose-binding periplasmic proteins/domains
          Length = 403

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 19  GDTSIEVLEQLCRAYTSKSGVSVIPEVMNITVLTARLQQIKAGGAGPHMALVPAD-MAGY 77
           GD     L ++ + +   +G+ V  E  +   L  +  Q+ A G GP +     D   GY
Sbjct: 46  GDKGYNGLAEVGKKFEKDTGIKVTIE--HPDKLEEKFPQVAATGDGPDIIFWAHDRFGGY 103

Query: 78  AEGAMYSEI-PEKFWSMSGLPDVDIRSSMQSNGRQYGIPILKGNHLVLYYNPEIYPEAPA 136
           A+  + +E+ P K +     P      +++ NG+  G P+     L L YN ++  EAP 
Sbjct: 104 AQSGLLAELTPSKAFQEKLFPFT--WDAVRFNGKLIGYPVAV-EALSLIYNKDLVKEAPK 160

Query: 137 SWXXXXXXXXXXXXKGIVPVAADLADPYCFIPFLTAFGGWPLK 179
           +W             G   +  +L +PY   P + A GG+  K
Sbjct: 161 TWEEIPALDKTLRANGKSAIMWNLQEPYFTWPVIAADGGYAFK 203


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 26,547,668
Number of extensions: 994662
Number of successful extensions: 2972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2972
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 273
Effective length of database: 25,922,359
Effective search space: 7076804007
Effective search space used: 7076804007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)