BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0009.p
         (88 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1361_2 [S] COG4886 Leucine-rich repeat (LRR) protein                55   2e-08
lin0290_1 [S] COG4886 Leucine-rich repeat (LRR) protein                55   3e-08
lin0661 [S] COG4886 Leucine-rich repeat (LRR) protein                  54   5e-08
CAC3280_2 [S] COG4886 Leucine-rich repeat (LRR) protein                48   3e-06

>SPy1361_2 [S] COG4886 Leucine-rich repeat (LRR) protein
          Length = 673

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 7/100 (7%), Positives = 17/100 (17%), Gaps = 22/100 (22%)

Query: 4   LTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSP 63
                V  N+I  L    G  A     +      +    + + +      +   +     
Sbjct: 26  SGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFH 85

Query: 64  V----------------------QKLKLEWLMLRRSRLSN 81
                                         L+   +    
Sbjct: 86  TLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLI 125


>lin0290_1 [S] COG4886 Leucine-rich repeat (LRR) protein
          Length = 673

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 1   LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60
            NK+ +L V+  Q T+ S    +  L         +          +           +D
Sbjct: 205 QNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQD 264

Query: 61  LSPVQKL-KLEWLMLRRSRLSN 81
              ++ +   +        L  
Sbjct: 265 FPALKVIKLEQNYRSSGRILKA 286



 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 1   LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60
            + L  L     Q  +       + ++ L++D  +  +    + +  L    A    V D
Sbjct: 183 FDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGD 242

Query: 61  LSPVQKL-KLEWLMLRRSRLSN 81
                   +            +
Sbjct: 243 DDQSIYSWRGARPQNLVLLSQD 264


>lin0661 [S] COG4886 Leucine-rich repeat (LRR) protein
          Length = 673

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 7/67 (10%), Positives = 15/67 (22%)

Query: 1   LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60
            +              L     +     L+  N +++     K    L D     N  + 
Sbjct: 165 AHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQY 224

Query: 61  LSPVQKL 67
                 +
Sbjct: 225 ELVKLLV 231



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 5/63 (7%), Positives = 14/63 (22%)

Query: 1   LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60
           +   T L     ++           L     D N  +  +    +          +  + 
Sbjct: 187 ILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQS 246

Query: 61  LSP 63
           +  
Sbjct: 247 IYS 249



 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 8/68 (11%), Positives = 13/68 (19%)

Query: 1   LNKLTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVED 60
            N L   +                              L     +   T LL +N +V  
Sbjct: 143 KNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRK 202

Query: 61  LSPVQKLK 68
               +   
Sbjct: 203 RWQNKIRY 210


>CAC3280_2 [S] COG4886 Leucine-rich repeat (LRR) protein
          Length = 673

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 3/78 (3%), Positives = 15/78 (19%), Gaps = 1/78 (1%)

Query: 4   LTFLAVEGNQITDLSPVSGLSALKKLVIDNNKIKSLVPLKNLNKLTDLLASNNQVEDLSP 63
              +               + + +     N  + S           +    ++     + 
Sbjct: 228 KLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAA 287

Query: 64  VQKLK-LEWLMLRRSRLS 80
              +     +  +R    
Sbjct: 288 NILIANNPHVFEKRLFSE 305


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,985,007
Number of extensions: 198029
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 32
Length of query: 88
Length of database: 38,378,431
Length adjustment: 58
Effective length of query: 30
Effective length of database: 31,689,059
Effective search space: 950671770
Effective search space used: 950671770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)