BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0005.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0926 [K] COG1309 Transcriptional regulator                          55   8e-08
MTH1787 [K] COG1309 Transcriptional regulator                          55   1e-07
alr1941 [K] COG1309 Transcriptional regulator                          54   1e-07
aq_2179 [K] COG1309 Transcriptional regulator                          52   7e-07
CC0732 [K] COG1309 Transcriptional regulator                           51   1e-06

>lin0926 [K] COG1309 Transcriptional regulator
          Length = 218

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 37/45 (82%)

Query: 11 KLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLL 55
          ++++A+I+L +EKGY G +T EIA  AG++E T+FRH+ +K++LL
Sbjct: 27 RIVAASIELFAEKGYAGTSTNEIAKKAGVAEGTIFRHYKTKKDLL 71


>MTH1787 [K] COG1309 Transcriptional regulator
          Length = 268

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 3/54 (5%), Positives = 8/54 (14%), Gaps = 1/54 (1%)

Query: 8  STEKLLS-AAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALE 60
          S         I            +        +            +++L     
Sbjct: 13 SLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDT 66


>alr1941 [K] COG1309 Transcriptional regulator
          Length = 359

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 2/53 (3%), Positives = 6/53 (11%)

Query: 3  PTKQGSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLL 55
            +           +   S+                 +             L 
Sbjct: 9  NRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLE 61


>aq_2179 [K] COG1309 Transcriptional regulator
          Length = 666

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 2/60 (3%), Positives = 6/60 (10%)

Query: 1  MRPTKQGSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALE 60
                          +    E   N     +                   +     +  
Sbjct: 7  PYCGVGCGLYINEKGKVKGDFEHPANLGDICKKPLYLPKVLNRGRIAKPMYRENKSHSFR 66


>CC0732 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 4   TKQGSTEKLLSAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQNLLESALE--- 60
            KQ + E++L+AA  L SE+GY G T ++IA AAG+S   +F  F  K  L E  L    
Sbjct: 24  AKQRTRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELFEEILTADY 83

Query: 61  RFQYAEEMRVFFSGKLVWELESDLLSISKKYH 92
              YA+ ++   + K V E    L  ++  +H
Sbjct: 84  EVIYAQMIQAARTAKTVDEALLGLFGVAYSFH 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,098,506
Number of extensions: 560173
Number of successful extensions: 1533
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1537
Number of HSP's successfully gapped: 8
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)