BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0072.p
         (693 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0055_2 [I] COG0511 Biotin carboxyl carrier protein                 666   0.0  
STM0055_1 [C] COG5016 Pyruvate/oxaloacetate carboxyltransferase       666   0.0  

>STM0055_2 [I] COG0511 Biotin carboxyl carrier protein
          Length = 116

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 0/594 (0%), Positives = 0/594 (0%), Gaps = 7/594 (1%)

Query: 104 VGPEGFAIRT---SGDAGCIAIGAASPAGVLYGVFHLLRLIGSLKNIEGLDEVVNPVNGL 160
           +  E  A +     G A       +                                   
Sbjct: 83  METEIRAAQAGTVRGIAVKSGDAVSVGD-                                141

Query: 161 RMINHWDNFDGSVERGYAGRSFFYENNQFTGELERIRDYARLMSSXXXXXXXXXXXXXXX 220
                                                                       
Sbjct: 142 -                                                            200

Query: 221 LETLFI-SKYLPEVAGIADVFRRYGIRLFLSVNFAGPMHEGEVGTADPLDPEVRKWWQDR 279
                                                                       
Sbjct: 201                                                              260

Query: 280 AAEVYAAVPDFGGFVVKADSENRPGPFTYGRDHADGANMLAEALEPFGGLVIWRCFVYNC 339
                                                                       
Sbjct: 261                                                              320

Query: 340 KQDWRDRKTDRARAAYDHFKPLDGKFNDNVILQIKNGPMDFQVREPVSPLFGALEQTNQV 399
                                                                       
Sbjct: 321                                                              380

Query: 400 IEFQIAQEYTGQQRHVCYLVPQWKEVLDFNTYAQGEASPVKRIVDGSLWGSRHSGIAAVS 459
                                                                       
Sbjct: 381                                                              440

Query: 460 NTGNDRNWTGHLLAQANLYGYGRLAWNPELTAEAIAAEWISLTFGPDPAVSGVISRILLD 519
                                                                       
Sbjct: 441                                                              500

Query: 520 SWNIYESYTAPLGVGWMINPEHHYGPNVDGYEYSQWGTYHYADHKGIGVDRTVKTGTGYS 579
                                                                       
Sbjct: 501 -                                                            559

Query: 580 AQYIGTNAERYDSVEECPDELLLFFHHVPYTHVLHSGKTVIQHIYDTHFEGXXXXXXXXX 639
                                                                       
Sbjct: 560                                                              619

Query: 640 XWSSLKGSIREDLYIQVEERLKEQADHAKEWRDQINTYFYRKSGIGDAGQRTIY 693
                                                                 
Sbjct: 620                                                        673


>STM0055_1 [C] COG5016 Pyruvate/oxaloacetate carboxyltransferase
          Length = 475

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 0/594 (0%), Positives = 0/594 (0%), Gaps = 7/594 (1%)

Query: 104 VGPEGFAIRT---SGDAGCIAIGAASPAGVLYGVFHLLRLIGSLKNIEGLDEVVNPVNGL 160
                          +             V      +         ++ +        G 
Sbjct: 83  GQNLLGYRHYADDVVERFVERAVKNGMD-VFRVFDAMNDPRNMKAALQAVRSHGAHAQGT 141

Query: 161 RMINHWDNFDGSVERGYAGRSFFYENNQFTGELERIRDYARLMSSXXXXXXXXXXXXXXX 220
                              +      +    + +       + +                
Sbjct: 142 LSYTTSPAHTLQTWLDLTEQLLETGVDSIAIK-DMSGILTPMAAYELVSEIKKRFEVRLH 200

Query: 221 LETLFI-SKYLPEVAGIADVFRRYGIRLFLSVNFAGPMHEGEVGTADPLDPEVRKWWQDR 279
           L            +    +           S++        E   A     E        
Sbjct: 201 LHCHATTGMAEMALLKAIEAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDIL 260

Query: 280 AAEVYAAVPDFGGFVVKADSENRPGPFTYGRDHADGANMLAEALEPFGGLVIWRCFVYNC 339
             E  AA          A      G  +          ML                    
Sbjct: 261 KLENIAAYFREVRKKYHAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVL 320

Query: 340 KQDWRDRKTDRARAAYDHFKPLDGKFNDNVILQIKNGPMDFQVREPVSPLFGALEQTNQV 399
            +  R R+             + G      +L  +      +    +             
Sbjct: 321 AEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVN 380

Query: 400 IEFQIAQEYTGQQRHVCYLVPQWKEVLDFNTYAQGEASPVKRIVDGSLWGSRHSGIAAVS 459
              Q      G             E+ +     + +A      + G+      +      
Sbjct: 381 AALQARVLEGGAPVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQ 440

Query: 460 NTGNDRNWTGHLLAQANLYGYGRLAWNPELTAEAIAAEWISLTFGPDPAVSGVISRILLD 519
                                                                       
Sbjct: 441                                                              500

Query: 520 SWNIYESYTAPLGVGWMINPEHHYGPNVDGYEYSQWGTYHYADHKGIGVDRTVKTGTGYS 579
                                                                       
Sbjct: 501 -                                                            559

Query: 580 AQYIGTNAERYDSVEECPDELLLFFHHVPYTHVLHSGKTVIQHIYDTHFEGXXXXXXXXX 639
                                                                       
Sbjct: 560                                                              619

Query: 640 XWSSLKGSIREDLYIQVEERLKEQADHAKEWRDQINTYFYRKSGIGDAGQRTIY 693
                                                                 
Sbjct: 620                                                        673


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 55,715,832
Number of extensions: 2498234
Number of successful extensions: 5234
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5228
Number of HSP's successfully gapped: 2
Length of query: 693
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 580
Effective length of database: 25,345,689
Effective search space: 14700499620
Effective search space used: 14700499620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 119 (50.4 bits)