BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0069.p (579 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 103 6e-22 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 88 3e-17 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 78 4e-14 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 62 2e-09 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 8e-08 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 128/515 (24%), Positives = 206/515 (40%), Gaps = 60/515 (11%) Query: 100 YPMAGNVELTFMNEKLGGTP----ERLPIDDEYEKRTGIKIKQLGGTPMTDQKFSLMLAS 155 +P+ L FM +P E+L I EK TG+ I +K +L ++S Sbjct: 41 FPLQEKKTLKFMTASSPLSPKDPNEKL-ILQRLEKETGVHIDWTNYQSDFAEKRNLDISS 99 Query: 156 GELPDIFLNTWLQYPGGPD----KAVEQGYILKLNDLMDKYAPNLKRTLEEHPEIDKMIK 211 G+LPD N G D ++G I+ + DL+DKY PNLK+ L+E PE ++ Sbjct: 100 GDLPDAIHND-----GASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMT 154 Query: 212 TDDGTYYAFPFI------RSEAGRVYGGPIIRKDWLDELKLTVPQTIDEWHTVLTAFKE- 264 DG Y+FP+I + V I KDWL +L L +P+T D+ VL AFK Sbjct: 155 APDGHIYSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNG 214 Query: 265 --KKNASA---PVTFRTMFLGERTGGFAGAFGVMGN----FYVNDGKVVYGYLEPGYKDY 315 N A P +F + E AFG+ N NDGKV + YK+ Sbjct: 215 DPNGNGEADEIPFSFISGNGNEDFKFLFAAFGIGDNDDHLVVGNDGKVDFTADNDNYKEG 274 Query: 316 LKTMAQWYKEGLIDKDFASIDAATVDKKMTSNESGATIGWQFYIESYNSAMQETDKKASF 375 +K + Q ++GLIDK+ D + K + G W T S+ Sbjct: 275 VKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVYFTW--------DKNNVTGSNESY 326 Query: 376 VXXXXXXXXKGQTPEFGQLDNXXXXXXXXXXXXXXKNPEAAMRWLDYAYTPEGSLLNTFG 435 GQ + + KN E +W+D Y P S+ N +G Sbjct: 327 DVLPVLAGPSGQK-HVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWG 385 Query: 436 IEG-----TTYTMENGKAKYTDLVVNNPEGLGSDQVMLKYSHGTNFPMIQQDNDLPAKFA 490 G + ++ L +N G+ L+ P+ D+ Sbjct: 386 TYGDDKQQNIFELDQASNSLKHLPLN-----GTAPAELRQKTEVGGPLAILDSYYGKVTT 440 Query: 491 QTSEA---IDIWKK------TNHESHLLPPITPTAEESDEMSSIMNDINALVKETELKII 541 +A +D+ K+ +N ++ P + T E+ D+++ I D+N + + I Sbjct: 441 MPDDAKWRLDLIKEYYVPYMSNVNNY--PRVFMTQEDLDKIAHIEADMNDYIYRKRAEWI 498 Query: 542 LGTEPVENYDKYVQQMKDMGIERALEIQQAAYERY 576 + +D Y ++++ G+ L I+Q Y++Y Sbjct: 499 VNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQY 533 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 41/250 (16%) Query: 129 EKRTGIKIKQLGGTPMTDQ---KFSLMLASGE-LPDIFLNTWLQYPGGPDKA--VEQGYI 182 E+ GIK P +Q + LM++SGE LPD+F Q KA + G + Sbjct: 71 EEELGIKFVTEWTQPNDEQFNTQLRLMMSSGEKLPDVF-----QVNDTAIKADLLSSGLV 125 Query: 183 LKLNDLMDKYA-PNLKRTLEEHPEIDKMIKTDDGTYYAFPFIRSEAGRVYGGP------I 235 + +++ ++ YA P LK+ E+ P+ T DG Y P R GG Sbjct: 126 MPVDEAIETYASPRLKQLFEQFPQA-FYPSTKDGVRYGIP-------RFSGGNGSDTLLW 177 Query: 236 IRKDWLDELKLTVPQTIDEWHTVLTAFKEK------KNASAPVTFRTMFLGERTGGFAGA 289 IR+DWLD+ L P T++E ++ F + KN + +TF G R G A + Sbjct: 178 IRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDTIGITFAAGDYGFRGGNIADS 237 Query: 290 ---FGVMGNFYV------NDGKVVYGYLEPGYKDYLKTMAQWYKEGLIDKDFASIDAATV 340 FG G+F +DG +VYG ++P KD L + +WY++G + DFA + A Sbjct: 238 SWVFGAFGDFVPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDFAILSAGDA 297 Query: 341 DKKMTSNESG 350 + S SG Sbjct: 298 QESFISGRSG 307 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 151/358 (42%), Gaps = 31/358 (8%) Query: 129 EKRTG--IKIKQLGGTPMTDQKFSLMLASGELPDIFLNTWLQYPGGPDKAVEQGYILKLN 186 EK TG IK+ + + D KF++++ASGE+P + G K+V+ G +L+ Sbjct: 61 EKYTGKEIKVTWVPDSSYND-KFNIVMASGEMPHAIVIK--DKSAGFIKSVKAGAFWELS 117 Query: 187 DLMDKYAPNLKRTLEEHPEIDKMIKTDDGTYYAFPFIRSEAGRVYGGPIIRKDWLDELKL 246 + Y NL + E+ + + G Y IR+ IIR DWL + L Sbjct: 118 PYLKDYK-NLSQADEKILKNSSVNGEVYGIYRTRDLIRACM-------IIRTDWLKNVGL 169 Query: 247 TVPQTIDEWHTVLTAFKEKK-------NASAPVTFRTMFLGERT--GGFAGAFGVMGNFY 297 +P+T+D+++ VL AFKEK + V + M LG + FG + Sbjct: 170 DMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVLQIWFGAPNRYG 229 Query: 298 VNDGKVVYGYLEPGYKDYLKTMAQWYKEGLIDKDFASIDAATVDKKMTSNESGATIGWQF 357 V +GK++ + Y D L + Y EGLI+KDFA +D+A + + ++G + Sbjct: 230 VENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPVVKGKAGVIVDTGS 289 Query: 358 YIESYNSAMQETDKK----ASFVXXXXXXXXKGQTPEFGQLDNXXXXXXXXXXXXXXKNP 413 SAM+E D+ V K P G K Sbjct: 290 RASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTSGY---SGMITIPKSSVKTEKEL 346 Query: 414 EAAMRWLDYAYTPEGSLLNTFGIEGTTYTMENGKAKYTDLVVNNPEGLGSDQVMLKYS 471 + + +LD E +L G++G Y +++G +T L NN L + + ++S Sbjct: 347 KEVLSFLDKMNDKEAQILTNNGVKGRNYELKDG--VFTSLEKNNKSLLYEHEGLAQFS 402 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 23/221 (10%) Query: 144 MTDQKFSLMLASGELPDIFLNTWLQYPGGPDKAVEQGYILKLNDLMDKYAPNLKRTLEEH 203 + + + + LA+G LP I ++ + A G ++ D + Y PNL + + Sbjct: 71 VKEDRLNAALAAGNLPQIVTIQDIKNSSVMN-AFRSGMFWEIGDYIKDY-PNLNKM---N 125 Query: 204 PEIDKMIKTDD---GTYYAFPFIRSEAGRVYGGPIIRKDWLDELKLTVPQTIDEWHTVLT 260 I+K + D G Y P R G +IRKDWLD L L P+T+DE + V Sbjct: 126 KLINKNVTIDGKLYGIYRERPLSRQ-------GIVIRKDWLDNLNLKTPKTLDELYEVAK 178 Query: 261 AFKEKKNASAPVTFRTMFLGERTGGFAGAFGVMGNF-------YVNDGKVVYGYLEPGYK 313 AF E T L +R GAF +G++ + GK ++ YK Sbjct: 179 AFTEDDPDKD-GKDDTFGLADRNDLIYGAFKTIGSYEGMPTDWKESGGKFTPDFMTQEYK 237 Query: 314 DYLKTMAQWYKEGLIDKDFASIDAATVDKKMTSNESGATIG 354 D + M + G ++KDF + + ++G IG Sbjct: 238 DTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYIG 278 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 99/415 (23%), Positives = 175/415 (42%), Gaps = 55/415 (13%) Query: 178 EQGYILKLNDLMDKYAPNLKRTLEEHPEIDKMIKTDDGTYYAFPFIRSEAG--RVYGGPI 235 ++G L LN +DK +K L E + T DG Y P E G +VY + Sbjct: 105 QKGAFLPLNKYLDKEGKKMKAELNE---VLWEGATIDGNIYGVP-SNKEVGEQQVY---V 157 Query: 236 IRKDWLDELKLTVPQT--IDEWHTVLTAFKEKKNASAPV----TFRTMFLGERTGGFAGA 289 K+ +D+ K+ + + + +L KE + + P+ F+ F + A Sbjct: 158 FNKNLVDKYKMDISKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFSYDYLIDNAVP 217 Query: 290 FGVMGNFYVNDGKVVYGYLEPGYKDYLKTMAQWYKEGLIDKDFA-SIDAATVDKKMTSNE 348 N Y + GK+V Y +P + LK++ +Y++G + KD A S D + DK+ Sbjct: 218 LPFAVNQYEDTGKIVNFYEQPDTLETLKSLHSFYQKGYVTKDIATSTDPWSYDKE----- 272 Query: 349 SGATIGWQFYIESYNSAMQETDKKASFVXXXXXXXXKGQTPEFGQLDNXXXXXXXXXXXX 408 W IE Y + K + +TP + N Sbjct: 273 -----NWFVRIEKYQPYAENIWDKNTGGKYKVVTQPIAETP---IIKNNSVTGAIQAVSV 324 Query: 409 XXKNPEAAMRWLDYAYTPE--GSLLNTFGIEGTTYT-MENGKAKYTDLVVNNPEGLGSDQ 465 ++PE A+++LD T E +L++ GIEGT Y +++GK + + Sbjct: 325 TSQHPEEAVKFLDLLNTDEYLRNLVDK-GIEGTHYKELDDGK-------IQDLPARVERY 376 Query: 466 VMLKYSHGTNFPMIQQDNDLPAKFAQTSEAIDIWKKTNHESHLLPPIT---PTAEESDEM 522 M Y+ G +F +++ D PA + D +K N +S P + +++ E+ Sbjct: 377 SMPTYALGNHF-ILKLYEDEPA------DKWDQFKTFNKKSVASPGLGFYFDSSKVRTEI 429 Query: 523 SSIMNDINALVKETELKIILGT-EPVENYDKYVQQMKDMGIERALEIQQAAYERY 576 +SI N N E ++ GT +PVE +K+ ++ D G+++ ++ Q Y+ Y Sbjct: 430 ASITNVCN----EFAPALLTGTVDPVEYTEKFKAKLNDAGMKKVMKEMQKQYDEY 480 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,167,533 Number of extensions: 1705297 Number of successful extensions: 4337 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 4333 Number of HSP's successfully gapped: 7 Length of query: 579 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 467 Effective length of database: 25,461,023 Effective search space: 11890297741 Effective search space used: 11890297741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 119 (50.4 bits)