BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0068.p (302 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 267 2e-71 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 257 2e-68 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 251 1e-66 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 248 7e-66 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 244 9e-65 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 135/297 (45%), Positives = 206/297 (69%), Gaps = 4/297 (1%) Query: 3 KTRLQ---KDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGF 59 K R Q K + RNK+LY+MILP L+Y+++F YVP++G +IAF+ + P G+ S+WVGF Sbjct: 22 KVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGF 81 Query: 60 KHFEEFFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMP 119 KHFE F+ FF++++NT++L +NL+F FP PIILA+LLNE++ +F+R QT+ Y+P Sbjct: 82 KHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIP 141 Query: 120 HFITLVVVAGIIR-YFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWG 178 HF++ V+V + FT G+IN++I G ++F+ + FRP+YI+ IW++ GW Sbjct: 142 HFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWA 201 Query: 179 TIIYLAAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEK 238 TIIY AAI ID YEAAK+DGA + +QI H+TLP I ++++LIL IG+I+ +GFE Sbjct: 202 TIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEH 261 Query: 239 IILLYSASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKR 295 + L+ +A E A++ T+VY G+ E +SYS AVG F S++ +++LAN +K+ Sbjct: 262 VFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKK 318 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 201/302 (66%), Gaps = 3/302 (0%) Query: 3 KTRLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHF 62 + ++ L + K+LY+M LP + + ++F+Y PL+G +AF+ F P +WVG +HF Sbjct: 17 RKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHF 76 Query: 63 EEFFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFI 122 E F F+ V++NT+ +S L+ GF PI+ A+LLNE++ +F+R QT++Y+PHF+ Sbjct: 77 IELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFV 136 Query: 123 TLVVVAGII-RYFTLSDGLINDVIAFFG--GARISFMQQPESFRPIYIVSEIWQQIGWGT 179 + VVVAGI+ + ++ G++N ++ FG + FM + E F I +S++W+++GW + Sbjct: 137 SWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNS 196 Query: 180 IIYLAAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKI 239 II+LAA+ GID Q YEAAK+DGA++ +QI H+TLPGI PT++++LIL+IG++M +GFEK Sbjct: 197 IIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQ 256 Query: 240 ILLYSASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKN 299 LL + + + ++V+ + G+ YSY A+G+FNSV+ LL LAN KR T Sbjct: 257 FLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQ 316 Query: 300 SL 301 S+ Sbjct: 317 SV 318 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 209/293 (71%), Gaps = 1/293 (0%) Query: 10 LLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFEEFFSSI 69 L R+KWLY++++P L+Y+++F Y+P++G +IAFK + P G S+WVGF +F++FF + Sbjct: 25 LKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNP 84 Query: 70 YFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFITLVVVAG 129 FFR+++NT++L+ +LLF FPAP+ILALLLNE++ +++R QT Y+PHF++ +V Sbjct: 85 DFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVS 144 Query: 130 I-IRYFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWGTIIYLAAITG 188 I +FT+ G+IN +I G +ISF+ + FRP+ ++ IW++ GWGTI++LAA+ Sbjct: 145 ITFVFFTVDTGVINKLIMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALAT 204 Query: 189 IDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILLYSASIY 248 +DQ+QYEAA +DGA + +++ H+TLP I T++++LIL IG+ +N+GFE++ L+ ++ Sbjct: 205 VDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNR 264 Query: 249 ETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNSL 301 AD+ T+VY GI + +YSYS AVGLF SV+ L+ AN +K+ + L Sbjct: 265 SVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGL 317 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 126/298 (42%), Positives = 189/298 (63%), Gaps = 1/298 (0%) Query: 3 KTRLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHF 62 + L + + + K L +M +P L+ +F Y+P+YG +IAFK + P +GIL SDW+GF F Sbjct: 7 QVSLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEF 66 Query: 63 EEFFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFI 122 +F SS F ++ NT+ LS + LL GF PIILA++LN+L S ++ Q I Y P+FI Sbjct: 67 TKFISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFI 126 Query: 123 TLVVVAGIIRYFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWGTIIY 182 ++VV+ G+I F G IN+ ++ FG + F+ P+ FRP+YI S IWQ +GW + +Y Sbjct: 127 SVVVIVGMIFLFFSVGGPINNFLSMFG-MKADFLTNPDFFRPLYIFSGIWQGMGWASTLY 185 Query: 183 LAAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILL 242 A + +D EAA++DGA Q+I H+ +P + P ++I +LA G IMNVG+EK L+ Sbjct: 186 TATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLM 245 Query: 243 YSASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNS 300 ++ T+++IST+VY+ G++ YSYS AVGLFN+VIN LL+ N KR Sbjct: 246 QTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGE 303 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 244 bits (624), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 191/297 (64%), Gaps = 3/297 (1%) Query: 8 KDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFEEFFS 67 K K L +M LP LI+ ++F YVPLYG IAF+ F P++ I DW GFKHF F+ Sbjct: 40 KKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFT 99 Query: 68 SIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFITLVVV 127 FF V++NT+ +S NL+ GF I LA+LLNEL++ F+R+ QTI+YMPHF++ VV Sbjct: 100 DPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVA 159 Query: 128 AGIIR-YFTLSDGLINDVIAFFG--GARISFMQQPESFRPIYIVSEIWQQIGWGTIIYLA 184 AG++ ++ +G+IN V+ G I ++ E F I S++W+ +GW TIIYLA Sbjct: 160 AGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLA 219 Query: 185 AITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILLYS 244 AIT ID +QYEAA+IDGAT+LQ+I ++TLPG+ P ++I+LI+ +G I+ GFE LL + Sbjct: 220 AITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMN 279 Query: 245 ASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNSL 301 + A+ + FV R GI ++S + A G+F +V++F L AN +KR + L Sbjct: 280 PMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARL 336 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,077,108 Number of extensions: 779109 Number of successful extensions: 3459 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 3357 Number of HSP's successfully gapped: 151 Length of query: 302 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 196 Effective length of database: 26,153,027 Effective search space: 5125993292 Effective search space used: 5125993292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)